diff --git a/backend/.dockerignore b/backend/.dockerignore new file mode 100644 index 0000000..c048473 --- /dev/null +++ b/backend/.dockerignore @@ -0,0 +1,10 @@ +node_modules +dist +.git +.env +.env.local +*.log +.DS_Store +Dockerfile +docker-compose.yml +README.md diff --git a/backend/.env.example b/backend/.env.example new file mode 100644 index 0000000..4504001 --- /dev/null +++ b/backend/.env.example @@ -0,0 +1,30 @@ +# --- Database ------------------------------------------------------------- +# When running via docker compose, "db" is the Postgres service hostname. +# For running the backend directly on your host, use localhost:5432. +DATABASE_URL=postgres://temetro:temetro@db:5432/temetro + +# --- Better Auth ---------------------------------------------------------- +# Generate a strong secret (min 32 chars): openssl rand -base64 32 +BETTER_AUTH_SECRET=replace-me-with-openssl-rand-base64-32 +# Public base URL of THIS backend (used for auth callbacks & cookies). +BETTER_AUTH_URL=http://localhost:4000 + +# --- App ------------------------------------------------------------------ +# The frontend origin — used for CORS, Better Auth trustedOrigins, and the +# links embedded in verification / reset / invitation emails. +FRONTEND_URL=http://localhost:3000 +PORT=4000 +NODE_ENV=development + +# Host port Postgres is published on by docker compose. Change it if 5432 is +# already in use on your machine (the app still talks to Postgres internally). +POSTGRES_PORT=5432 + +# --- Email (optional) ----------------------------------------------------- +# If SMTP_HOST is unset, emails (verify/reset/invite) are printed to the +# server console instead of being sent — zero setup for local development. +# SMTP_HOST=smtp.example.com +# SMTP_PORT=587 +# SMTP_USER= +# SMTP_PASS= +# SMTP_FROM="temetro " diff --git a/backend/.gitignore b/backend/.gitignore new file mode 100644 index 0000000..bd621c3 --- /dev/null +++ b/backend/.gitignore @@ -0,0 +1,8 @@ +node_modules +dist +.env +.env.local +*.log +npm-debug.log* +.DS_Store +coverage diff --git a/backend/Dockerfile b/backend/Dockerfile new file mode 100644 index 0000000..ffc1ffe --- /dev/null +++ b/backend/Dockerfile @@ -0,0 +1,19 @@ +# --- build stage: compile TypeScript -> dist ------------------------------ +FROM node:22-alpine AS build +WORKDIR /app +COPY package*.json ./ +RUN npm ci +COPY . . +RUN npm run build + +# --- runtime stage: prod deps only ----------------------------------------- +FROM node:22-alpine AS runtime +WORKDIR /app +ENV NODE_ENV=production +COPY package*.json ./ +RUN npm ci --omit=dev +COPY --from=build /app/dist ./dist +COPY --from=build /app/drizzle ./drizzle +EXPOSE 4000 +# Apply migrations, then start the API. +CMD ["sh", "-c", "node dist/migrate.js && node dist/index.js"] diff --git a/backend/README.md b/backend/README.md new file mode 100644 index 0000000..2bd7827 --- /dev/null +++ b/backend/README.md @@ -0,0 +1,75 @@ +# temetro backend + +TypeScript + Express + Postgres API for [temetro](../). Authentication is powered by +[Better Auth](https://better-auth.com) (email/password with verification, password reset, and +multi-tenant **organizations** with role-based access control). Patient records are **scoped to an +organization** (a clinic) and exposed over a small REST API that mirrors the frontend's `Patient` +shape exactly. + +## Quick start (Docker) + +```bash +cp .env.example .env +# set a strong secret: +# openssl rand -base64 32 -> paste into BETTER_AUTH_SECRET +docker compose up # db + backend + frontend +``` + +- Frontend → http://localhost:3000 +- Backend → http://localhost:4000 (health: `GET /health`, auth health: `GET /api/auth/ok`) +- Postgres → localhost:5432 + +Run only the API + database: `docker compose up db backend`. +Browse the DB with Adminer: `docker compose --profile tools up adminer` → http://localhost:8080. + +Migrations are applied automatically on container start (`node dist/migrate.js`). + +## Local development (without Docker) + +```bash +npm install +cp .env.example .env # point DATABASE_URL at a local Postgres (localhost:5432) +npm run db:migrate # apply migrations (drizzle-kit) +npm run dev # tsx watch on http://localhost:4000 +``` + +## Auth & schema workflow + +The Better Auth tables are generated into `src/db/schema/auth.ts` from `src/auth.ts`. **Re-run after +changing auth config/plugins**, then regenerate the SQL migration: + +```bash +npm run auth:generate # better-auth CLI -> src/db/schema/auth.ts +npm run db:generate # drizzle-kit -> ./drizzle/*.sql +npm run db:migrate # apply +``` + +## API + +All patient routes require a signed-in user (Better Auth session cookie) **and** an active +organization; access is gated by the caller's clinic role. + +| Method | Path | Permission | Notes | +| --- | --- | --- | --- | +| GET | `/api/patients` | `patient:read` | list patients in the active clinic | +| GET | `/api/patients/:fileNumber` | `patient:read` | one patient (404 if absent) | +| POST | `/api/patients` | `patient:write` | create (409 if file number exists) | +| PUT | `/api/patients/:fileNumber` | `patient:write` | replace the full record | +| DELETE | `/api/patients/:fileNumber` | `patient:delete` | remove a patient | + +Auth endpoints (sign up / in / out, verify email, reset password, organizations & invitations) are +served by Better Auth under `/api/auth/*`. + +### Roles + +| Role | Patient access | Clinic management | +| --- | --- | --- | +| `owner` | read / write / delete | full | +| `admin` | read / write / delete | members, invitations, settings | +| `member` (clinician) | read / write | — | +| `viewer` | read | — | + +## Environment + +See `.env.example`. If `SMTP_HOST` is unset, verification / reset / invitation emails are **printed +to the server console** instead of being sent — no setup required for local development. diff --git a/backend/docker-compose.yml b/backend/docker-compose.yml new file mode 100644 index 0000000..3e17d4a --- /dev/null +++ b/backend/docker-compose.yml @@ -0,0 +1,80 @@ +# Full-stack dev/run orchestration for temetro. +# +# cp .env.example .env # then set BETTER_AUTH_SECRET +# docker compose up # db + backend + frontend +# +# Frontend -> http://localhost:3000 +# Backend -> http://localhost:4000 +# Postgres -> localhost:5432 +# +# The frontend service builds the sibling ../frontend app. Run just the API +# with: docker compose up db backend +# +# Optional DB browser (Adminer) lives behind a profile: +# docker compose --profile tools up adminer # http://localhost:8080 + +services: + db: + image: postgres:17-alpine + restart: unless-stopped + environment: + POSTGRES_USER: temetro + POSTGRES_PASSWORD: temetro + POSTGRES_DB: temetro + ports: + # Host port is configurable to avoid clashing with an existing Postgres. + - "${POSTGRES_PORT:-5432}:5432" + volumes: + - temetro_pgdata:/var/lib/postgresql/data + healthcheck: + test: ["CMD-SHELL", "pg_isready -U temetro -d temetro"] + interval: 5s + timeout: 5s + retries: 10 + + backend: + build: + context: . + restart: unless-stopped + depends_on: + db: + condition: service_healthy + environment: + DATABASE_URL: postgres://temetro:temetro@db:5432/temetro + BETTER_AUTH_SECRET: ${BETTER_AUTH_SECRET:?set BETTER_AUTH_SECRET in .env (openssl rand -base64 32)} + BETTER_AUTH_URL: http://localhost:4000 + FRONTEND_URL: http://localhost:3000 + PORT: "4000" + NODE_ENV: production + SMTP_HOST: ${SMTP_HOST:-} + SMTP_PORT: ${SMTP_PORT:-} + SMTP_USER: ${SMTP_USER:-} + SMTP_PASS: ${SMTP_PASS:-} + SMTP_FROM: ${SMTP_FROM:-temetro } + ports: + - "4000:4000" + + frontend: + build: + context: ../frontend + args: + NEXT_PUBLIC_API_URL: http://localhost:4000 + restart: unless-stopped + depends_on: + - backend + environment: + NEXT_PUBLIC_API_URL: http://localhost:4000 + ports: + - "3000:3000" + + adminer: + image: adminer:5 + profiles: ["tools"] + restart: unless-stopped + depends_on: + - db + ports: + - "8080:8080" + +volumes: + temetro_pgdata: diff --git a/backend/drizzle.config.ts b/backend/drizzle.config.ts new file mode 100644 index 0000000..f5f5179 --- /dev/null +++ b/backend/drizzle.config.ts @@ -0,0 +1,13 @@ +import "dotenv/config"; +import { defineConfig } from "drizzle-kit"; + +export default defineConfig({ + schema: "./src/db/schema/index.ts", + out: "./drizzle", + dialect: "postgresql", + dbCredentials: { + url: + process.env.DATABASE_URL ?? + "postgres://temetro:temetro@localhost:5432/temetro", + }, +}); diff --git a/backend/drizzle/0000_small_sir_ram.sql b/backend/drizzle/0000_small_sir_ram.sql new file mode 100644 index 0000000..7d2662b --- /dev/null +++ b/backend/drizzle/0000_small_sir_ram.sql @@ -0,0 +1,183 @@ +CREATE TABLE "account" ( + "id" text PRIMARY KEY NOT NULL, + "account_id" text NOT NULL, + "provider_id" text NOT NULL, + "user_id" text NOT NULL, + "access_token" text, + "refresh_token" text, + "id_token" text, + "access_token_expires_at" timestamp, + "refresh_token_expires_at" timestamp, + "scope" text, + "password" text, + "created_at" timestamp DEFAULT now() NOT NULL, + "updated_at" timestamp NOT NULL +); +--> statement-breakpoint +CREATE TABLE "invitation" ( + "id" text PRIMARY KEY NOT NULL, + "organization_id" text NOT NULL, + "email" text NOT NULL, + "role" text, + "status" text DEFAULT 'pending' NOT NULL, + "expires_at" timestamp NOT NULL, + "created_at" timestamp DEFAULT now() NOT NULL, + "inviter_id" text NOT NULL +); +--> statement-breakpoint +CREATE TABLE "member" ( + "id" text PRIMARY KEY NOT NULL, + "organization_id" text NOT NULL, + "user_id" text NOT NULL, + "role" text DEFAULT 'member' NOT NULL, + "created_at" timestamp NOT NULL +); +--> statement-breakpoint +CREATE TABLE "organization" ( + "id" text PRIMARY KEY NOT NULL, + "name" text NOT NULL, + "slug" text NOT NULL, + "logo" text, + "created_at" timestamp NOT NULL, + "metadata" text, + CONSTRAINT "organization_slug_unique" UNIQUE("slug") +); +--> statement-breakpoint +CREATE TABLE "rate_limit" ( + "id" text PRIMARY KEY NOT NULL, + "key" text NOT NULL, + "count" integer NOT NULL, + "last_request" bigint NOT NULL, + CONSTRAINT "rate_limit_key_unique" UNIQUE("key") +); +--> statement-breakpoint +CREATE TABLE "session" ( + "id" text PRIMARY KEY NOT NULL, + "expires_at" timestamp NOT NULL, + "token" text NOT NULL, + "created_at" timestamp DEFAULT now() NOT NULL, + "updated_at" timestamp NOT NULL, + "ip_address" text, + "user_agent" text, + "user_id" text NOT NULL, + "active_organization_id" text, + CONSTRAINT "session_token_unique" UNIQUE("token") +); +--> statement-breakpoint +CREATE TABLE "user" ( + "id" text PRIMARY KEY NOT NULL, + "name" text NOT NULL, + "email" text NOT NULL, + "email_verified" boolean DEFAULT false NOT NULL, + "image" text, + "created_at" timestamp DEFAULT now() NOT NULL, + "updated_at" timestamp DEFAULT now() NOT NULL, + CONSTRAINT "user_email_unique" UNIQUE("email") +); +--> statement-breakpoint +CREATE TABLE "verification" ( + "id" text PRIMARY KEY NOT NULL, + "identifier" text NOT NULL, + "value" text NOT NULL, + "expires_at" timestamp NOT NULL, + "created_at" timestamp DEFAULT now() NOT NULL, + "updated_at" timestamp DEFAULT now() NOT NULL +); +--> statement-breakpoint +CREATE TABLE "patient_allergies" ( + "id" uuid PRIMARY KEY DEFAULT gen_random_uuid() NOT NULL, + "patient_id" uuid NOT NULL, + "position" integer DEFAULT 0 NOT NULL, + "substance" text NOT NULL, + "reaction" text NOT NULL, + "severity" text NOT NULL +); +--> statement-breakpoint +CREATE TABLE "patient_encounters" ( + "id" uuid PRIMARY KEY DEFAULT gen_random_uuid() NOT NULL, + "patient_id" uuid NOT NULL, + "position" integer DEFAULT 0 NOT NULL, + "date" text NOT NULL, + "type" text NOT NULL, + "provider" text NOT NULL, + "summary" text NOT NULL +); +--> statement-breakpoint +CREATE TABLE "patient_labs" ( + "id" uuid PRIMARY KEY DEFAULT gen_random_uuid() NOT NULL, + "patient_id" uuid NOT NULL, + "position" integer DEFAULT 0 NOT NULL, + "name" text NOT NULL, + "value" text NOT NULL, + "flag" text NOT NULL, + "taken_at" text NOT NULL +); +--> statement-breakpoint +CREATE TABLE "patient_medications" ( + "id" uuid PRIMARY KEY DEFAULT gen_random_uuid() NOT NULL, + "patient_id" uuid NOT NULL, + "position" integer DEFAULT 0 NOT NULL, + "name" text NOT NULL, + "dose" text NOT NULL, + "frequency" text NOT NULL +); +--> statement-breakpoint +CREATE TABLE "patients" ( + "id" uuid PRIMARY KEY DEFAULT gen_random_uuid() NOT NULL, + "organization_id" text NOT NULL, + "file_number" text NOT NULL, + "name" text NOT NULL, + "age" integer NOT NULL, + "sex" text NOT NULL, + "pcp" text NOT NULL, + "status" text NOT NULL, + "initials" text NOT NULL, + "alerts" jsonb NOT NULL, + "vitals_bp" text NOT NULL, + "vitals_hr" text NOT NULL, + "vitals_temp" text NOT NULL, + "vitals_spo2" text NOT NULL, + "vitals_taken_at" text NOT NULL, + "vitals_trend" jsonb NOT NULL, + "lab_trend" jsonb NOT NULL, + "created_by" text, + "created_at" timestamp DEFAULT now() NOT NULL, + "updated_at" timestamp DEFAULT now() NOT NULL +); +--> statement-breakpoint +CREATE TABLE "patient_problems" ( + "id" uuid PRIMARY KEY DEFAULT gen_random_uuid() NOT NULL, + "patient_id" uuid NOT NULL, + "position" integer DEFAULT 0 NOT NULL, + "label" text NOT NULL, + "since" text NOT NULL +); +--> statement-breakpoint +ALTER TABLE "account" ADD CONSTRAINT "account_user_id_user_id_fk" FOREIGN KEY ("user_id") REFERENCES "public"."user"("id") ON DELETE cascade ON UPDATE no action;--> statement-breakpoint +ALTER TABLE "invitation" ADD CONSTRAINT "invitation_organization_id_organization_id_fk" FOREIGN KEY ("organization_id") REFERENCES "public"."organization"("id") ON DELETE cascade ON UPDATE no action;--> statement-breakpoint +ALTER TABLE "invitation" ADD CONSTRAINT "invitation_inviter_id_user_id_fk" FOREIGN KEY ("inviter_id") REFERENCES "public"."user"("id") ON DELETE cascade ON UPDATE no action;--> statement-breakpoint +ALTER TABLE "member" ADD CONSTRAINT "member_organization_id_organization_id_fk" FOREIGN KEY ("organization_id") REFERENCES "public"."organization"("id") ON DELETE cascade ON UPDATE no action;--> statement-breakpoint +ALTER TABLE "member" ADD CONSTRAINT "member_user_id_user_id_fk" FOREIGN KEY ("user_id") REFERENCES "public"."user"("id") ON DELETE cascade ON UPDATE no action;--> statement-breakpoint +ALTER TABLE "session" ADD CONSTRAINT "session_user_id_user_id_fk" FOREIGN KEY ("user_id") REFERENCES "public"."user"("id") ON DELETE cascade ON UPDATE no action;--> statement-breakpoint +ALTER TABLE "patient_allergies" ADD CONSTRAINT "patient_allergies_patient_id_patients_id_fk" FOREIGN KEY ("patient_id") REFERENCES "public"."patients"("id") ON DELETE cascade ON UPDATE no action;--> statement-breakpoint +ALTER TABLE "patient_encounters" ADD CONSTRAINT "patient_encounters_patient_id_patients_id_fk" FOREIGN KEY ("patient_id") REFERENCES "public"."patients"("id") ON DELETE cascade ON UPDATE no action;--> statement-breakpoint +ALTER TABLE "patient_labs" ADD CONSTRAINT "patient_labs_patient_id_patients_id_fk" FOREIGN KEY ("patient_id") REFERENCES "public"."patients"("id") ON DELETE cascade ON UPDATE no action;--> statement-breakpoint +ALTER TABLE "patient_medications" ADD CONSTRAINT "patient_medications_patient_id_patients_id_fk" FOREIGN KEY ("patient_id") REFERENCES "public"."patients"("id") ON DELETE cascade ON UPDATE no action;--> statement-breakpoint +ALTER TABLE "patients" ADD CONSTRAINT "patients_organization_id_organization_id_fk" FOREIGN KEY ("organization_id") REFERENCES "public"."organization"("id") ON DELETE cascade ON UPDATE no action;--> statement-breakpoint +ALTER TABLE "patients" ADD CONSTRAINT "patients_created_by_user_id_fk" FOREIGN KEY ("created_by") REFERENCES "public"."user"("id") ON DELETE set null ON UPDATE no action;--> statement-breakpoint +ALTER TABLE "patient_problems" ADD CONSTRAINT "patient_problems_patient_id_patients_id_fk" FOREIGN KEY ("patient_id") REFERENCES "public"."patients"("id") ON DELETE cascade ON UPDATE no action;--> statement-breakpoint +CREATE INDEX "account_userId_idx" ON "account" USING btree ("user_id");--> statement-breakpoint +CREATE INDEX "invitation_organizationId_idx" ON "invitation" USING btree ("organization_id");--> statement-breakpoint +CREATE INDEX "invitation_email_idx" ON "invitation" USING btree ("email");--> statement-breakpoint +CREATE INDEX "member_organizationId_idx" ON "member" USING btree ("organization_id");--> statement-breakpoint +CREATE INDEX "member_userId_idx" ON "member" USING btree ("user_id");--> statement-breakpoint +CREATE UNIQUE INDEX "organization_slug_uidx" ON "organization" USING btree ("slug");--> statement-breakpoint +CREATE INDEX "session_userId_idx" ON "session" USING btree ("user_id");--> statement-breakpoint +CREATE INDEX "verification_identifier_idx" ON "verification" USING btree ("identifier");--> statement-breakpoint +CREATE INDEX "allergies_patient_idx" ON "patient_allergies" USING btree ("patient_id");--> statement-breakpoint +CREATE INDEX "encounters_patient_idx" ON "patient_encounters" USING btree ("patient_id");--> statement-breakpoint +CREATE INDEX "labs_patient_idx" ON "patient_labs" USING btree ("patient_id");--> statement-breakpoint +CREATE INDEX "medications_patient_idx" ON "patient_medications" USING btree ("patient_id");--> statement-breakpoint +CREATE UNIQUE INDEX "patients_org_file_uidx" ON "patients" USING btree ("organization_id","file_number");--> statement-breakpoint +CREATE INDEX "patients_org_idx" ON "patients" USING btree ("organization_id");--> statement-breakpoint +CREATE INDEX "problems_patient_idx" ON "patient_problems" USING btree ("patient_id"); \ No newline at end of file diff --git a/backend/drizzle/meta/0000_snapshot.json b/backend/drizzle/meta/0000_snapshot.json new file mode 100644 index 0000000..aa9a4ad --- /dev/null +++ b/backend/drizzle/meta/0000_snapshot.json @@ -0,0 +1,1332 @@ +{ + "id": "750b3889-8b7f-42da-84fa-30d1fa7e1fb1", + "prevId": "00000000-0000-0000-0000-000000000000", + "version": "7", + "dialect": "postgresql", + "tables": { + "public.account": { + "name": "account", + "schema": "", + "columns": { + "id": { + "name": "id", + "type": "text", + "primaryKey": true, + "notNull": true + }, + "account_id": { + "name": "account_id", + "type": "text", + "primaryKey": false, + "notNull": true + }, + "provider_id": { + "name": "provider_id", + "type": "text", + "primaryKey": false, + "notNull": true + }, + "user_id": { + "name": "user_id", + "type": "text", + "primaryKey": false, + "notNull": true + }, + "access_token": { + "name": "access_token", + "type": "text", + "primaryKey": false, + "notNull": false + }, + "refresh_token": { + "name": 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{ + "expression": "user_id", + "isExpression": false, + "asc": true, + "nulls": "last" + } + ], + "isUnique": false, + "concurrently": false, + "method": "btree", + "with": {} + } + }, + "foreignKeys": { + "account_user_id_user_id_fk": { + "name": "account_user_id_user_id_fk", + "tableFrom": "account", + "tableTo": "user", + "columnsFrom": [ + "user_id" + ], + "columnsTo": [ + "id" + ], + "onDelete": "cascade", + "onUpdate": "no action" + } + }, + "compositePrimaryKeys": {}, + "uniqueConstraints": {}, + "policies": {}, + "checkConstraints": {}, + "isRLSEnabled": false + }, + "public.invitation": { + "name": "invitation", + "schema": "", + "columns": { + "id": { + "name": "id", + "type": "text", + "primaryKey": true, + "notNull": true + }, + "organization_id": { + "name": "organization_id", + "type": "text", + "primaryKey": false, + "notNull": true + }, + "email": { + "name": "email", + "type": "text", + "primaryKey": false, + "notNull": true + }, + "role": { + "name": "role", + "type": 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--noEmit", + "auth:generate": "better-auth generate --config src/auth.ts --output src/db/schema/auth.ts -y", + "db:generate": "drizzle-kit generate", + "db:migrate": "drizzle-kit migrate", + "db:apply": "node dist/migrate.js", + "db:push": "drizzle-kit push" + }, + "dependencies": { + "better-auth": "^1.6.13", + "cors": "^2.8.6", + "dotenv": "^17.4.2", + "drizzle-orm": "^0.45.2", + "express": "^5.2.1", + "nanoid": "^5.1.11", + "nodemailer": "^8.0.10", + "pg": "^8.21.0", + "zod": "^4.4.3" + }, + "devDependencies": { + "@better-auth/cli": "^1.4.21", + "@types/cors": "^2.8.19", + "@types/express": "^5.0.6", + "@types/node": "^25.9.1", + "@types/nodemailer": "^8.0.0", + "@types/pg": "^8.20.0", + "drizzle-kit": "^0.31.10", + "tsx": "^4.22.4", + "typescript": "^6.0.3" + } +} diff --git a/backend/src/auth.ts b/backend/src/auth.ts new file mode 100644 index 0000000..5060018 --- /dev/null +++ b/backend/src/auth.ts @@ -0,0 +1,107 @@ +import { betterAuth } from "better-auth"; +import { drizzleAdapter } from "better-auth/adapters/drizzle"; +import { organization } from "better-auth/plugins"; + +import { db } from "./db/index.js"; +import * as authSchema from "./db/schema/auth.js"; +import { env, isProd } from "./env.js"; +import { ac, roles } from "./lib/access.js"; +import { sendEmail } from "./lib/email.js"; + +const WEEK = 60 * 60 * 24 * 7; +const DAY = 60 * 60 * 24; + +export const auth = betterAuth({ + appName: "temetro", + baseURL: env.BETTER_AUTH_URL, + secret: env.BETTER_AUTH_SECRET, + trustedOrigins: [env.FRONTEND_URL], + + database: drizzleAdapter(db, { + provider: "pg", + schema: authSchema, + }), + + emailAndPassword: { + enabled: true, + requireEmailVerification: true, + minPasswordLength: 12, + maxPasswordLength: 256, + revokeSessionsOnPasswordReset: true, + sendResetPassword: async ({ user, url }) => { + await sendEmail({ + to: user.email, + subject: "Reset your temetro password", + text: `Reset your password by opening this link:\n\n${url}\n\nIf you didn't request this, you can ignore this email.`, + }); + }, + }, + + emailVerification: { + sendOnSignUp: true, + autoSignInAfterVerification: true, + sendVerificationEmail: async ({ user, url }) => { + await sendEmail({ + to: user.email, + subject: "Verify your email for temetro", + text: `Welcome to temetro. Verify your email address by opening this link:\n\n${url}`, + }); + }, + }, + + plugins: [ + organization({ + ac, + roles, + creatorRole: "owner", + allowUserToCreateOrganization: async (user) => user.emailVerified === true, + membershipLimit: 200, + invitationExpiresIn: WEEK, + sendInvitationEmail: async (data) => { + const url = `${env.FRONTEND_URL}/accept-invite?id=${data.invitation.id}`; + await sendEmail({ + to: data.email, + subject: `${data.inviter.user.name} invited you to join ${data.organization.name} on temetro`, + text: `${data.inviter.user.name} invited you to join the clinic "${data.organization.name}".\n\nAccept the invitation:\n\n${url}`, + }); + }, + }), + ], + + rateLimit: { + enabled: true, + storage: "database", + customRules: { + "/sign-in/email": { window: 60, max: 5 }, + "/sign-up/email": { window: 60, max: 3 }, + "/request-password-reset": { window: 60, max: 3 }, + }, + }, + + session: { + expiresIn: WEEK, + updateAge: DAY, + cookieCache: { enabled: true, maxAge: 300 }, + }, + + advanced: { + useSecureCookies: isProd, + defaultCookieAttributes: { sameSite: "lax" }, + ipAddress: { ipAddressHeaders: ["x-forwarded-for", "x-real-ip"] }, + }, + + databaseHooks: { + session: { + create: { + after: async (session) => { + // Lightweight audit trail; swap console for a real sink in prod. + console.info( + `[audit] session.created user=${session.userId} ip=${session.ipAddress ?? "-"}`, + ); + }, + }, + }, + }, +}); + +export type Auth = typeof auth; diff --git a/backend/src/db/index.ts b/backend/src/db/index.ts new file mode 100644 index 0000000..a33f090 --- /dev/null +++ b/backend/src/db/index.ts @@ -0,0 +1,14 @@ +import { drizzle } from "drizzle-orm/node-postgres"; +import pg from "pg"; + +import { env } from "../env.js"; + +const { Pool } = pg; + +export const pool = new Pool({ connectionString: env.DATABASE_URL }); + +// No `schema` is passed here on purpose: we use the core query builder +// (db.select/insert/update from explicit table objects), and keeping the +// patient schema out of this module avoids a circular import with auth.ts +// (which Better Auth's CLI loads to generate the auth schema). +export const db = drizzle(pool); diff --git a/backend/src/db/schema/auth.ts b/backend/src/db/schema/auth.ts new file mode 100644 index 0000000..e418491 --- /dev/null +++ b/backend/src/db/schema/auth.ts @@ -0,0 +1,193 @@ +import { relations } from "drizzle-orm"; +import { + pgTable, + text, + bigint, + timestamp, + boolean, + integer, + index, + uniqueIndex, +} from "drizzle-orm/pg-core"; + +export const user = pgTable("user", { + id: text("id").primaryKey(), + name: text("name").notNull(), + email: text("email").notNull().unique(), + emailVerified: boolean("email_verified").default(false).notNull(), + image: text("image"), + createdAt: timestamp("created_at").defaultNow().notNull(), + updatedAt: timestamp("updated_at") + .defaultNow() + .$onUpdate(() => /* @__PURE__ */ new Date()) + .notNull(), +}); + +export const session = pgTable( + "session", + { + id: text("id").primaryKey(), + expiresAt: timestamp("expires_at").notNull(), + token: text("token").notNull().unique(), + createdAt: timestamp("created_at").defaultNow().notNull(), + updatedAt: timestamp("updated_at") + .$onUpdate(() => /* @__PURE__ */ new Date()) + .notNull(), + ipAddress: text("ip_address"), + userAgent: text("user_agent"), + userId: text("user_id") + .notNull() + .references(() => user.id, { onDelete: "cascade" }), + activeOrganizationId: text("active_organization_id"), + }, + (table) => [index("session_userId_idx").on(table.userId)], +); + +export const account = pgTable( + "account", + { + id: text("id").primaryKey(), + accountId: text("account_id").notNull(), + providerId: text("provider_id").notNull(), + userId: text("user_id") + .notNull() + .references(() => user.id, { onDelete: "cascade" }), + accessToken: text("access_token"), + refreshToken: text("refresh_token"), + idToken: text("id_token"), + accessTokenExpiresAt: timestamp("access_token_expires_at"), + refreshTokenExpiresAt: timestamp("refresh_token_expires_at"), + scope: text("scope"), + password: text("password"), + createdAt: timestamp("created_at").defaultNow().notNull(), + updatedAt: timestamp("updated_at") + .$onUpdate(() => /* @__PURE__ */ new Date()) + .notNull(), + }, + (table) => [index("account_userId_idx").on(table.userId)], +); + +export const verification = pgTable( + "verification", + { + id: text("id").primaryKey(), + identifier: text("identifier").notNull(), + value: text("value").notNull(), + expiresAt: timestamp("expires_at").notNull(), + createdAt: timestamp("created_at").defaultNow().notNull(), + updatedAt: timestamp("updated_at") + .defaultNow() + .$onUpdate(() => /* @__PURE__ */ new Date()) + .notNull(), + }, + (table) => [index("verification_identifier_idx").on(table.identifier)], +); + +export const organization = pgTable( + "organization", + { + id: text("id").primaryKey(), + name: text("name").notNull(), + slug: text("slug").notNull().unique(), + logo: text("logo"), + createdAt: timestamp("created_at").notNull(), + metadata: text("metadata"), + }, + (table) => [uniqueIndex("organization_slug_uidx").on(table.slug)], +); + +export const member = pgTable( + "member", + { + id: text("id").primaryKey(), + organizationId: text("organization_id") + .notNull() + .references(() => organization.id, { onDelete: "cascade" }), + userId: text("user_id") + .notNull() + .references(() => user.id, { onDelete: "cascade" }), + role: text("role").default("member").notNull(), + createdAt: timestamp("created_at").notNull(), + }, + (table) => [ + index("member_organizationId_idx").on(table.organizationId), + index("member_userId_idx").on(table.userId), + ], +); + +export const invitation = pgTable( + "invitation", + { + id: text("id").primaryKey(), + organizationId: text("organization_id") + .notNull() + .references(() => organization.id, { onDelete: "cascade" }), + email: text("email").notNull(), + role: text("role"), + status: text("status").default("pending").notNull(), + expiresAt: timestamp("expires_at").notNull(), + createdAt: timestamp("created_at").defaultNow().notNull(), + inviterId: text("inviter_id") + .notNull() + .references(() => user.id, { onDelete: "cascade" }), + }, + (table) => [ + index("invitation_organizationId_idx").on(table.organizationId), + index("invitation_email_idx").on(table.email), + ], +); + +export const rateLimit = pgTable("rate_limit", { + id: text("id").primaryKey(), + key: text("key").notNull().unique(), + count: integer("count").notNull(), + lastRequest: bigint("last_request", { mode: "number" }).notNull(), +}); + +export const userRelations = relations(user, ({ many }) => ({ + sessions: many(session), + accounts: many(account), + members: many(member), + invitations: many(invitation), +})); + +export const sessionRelations = relations(session, ({ one }) => ({ + user: one(user, { + fields: [session.userId], + references: [user.id], + }), +})); + +export const accountRelations = relations(account, ({ one }) => ({ + user: one(user, { + fields: [account.userId], + references: [user.id], + }), +})); + +export const organizationRelations = relations(organization, ({ many }) => ({ + members: many(member), + invitations: many(invitation), +})); + +export const memberRelations = relations(member, ({ one }) => ({ + organization: one(organization, { + fields: [member.organizationId], + references: [organization.id], + }), + user: one(user, { + fields: [member.userId], + references: [user.id], + }), +})); + +export const invitationRelations = relations(invitation, ({ one }) => ({ + organization: one(organization, { + fields: [invitation.organizationId], + references: [organization.id], + }), + user: one(user, { + fields: [invitation.inviterId], + references: [user.id], + }), +})); diff --git a/backend/src/db/schema/index.ts b/backend/src/db/schema/index.ts new file mode 100644 index 0000000..0c41990 --- /dev/null +++ b/backend/src/db/schema/index.ts @@ -0,0 +1,2 @@ +export * from "./auth.js"; +export * from "./patients.js"; diff --git a/backend/src/db/schema/patients.ts b/backend/src/db/schema/patients.ts new file mode 100644 index 0000000..d853fa4 --- /dev/null +++ b/backend/src/db/schema/patients.ts @@ -0,0 +1,144 @@ +import { + index, + integer, + jsonb, + pgTable, + text, + timestamp, + uniqueIndex, + uuid, +} from "drizzle-orm/pg-core"; + +import type { + AllergySeverity, + LabFlag, + PatientStatus, + Sex, + Trend, +} from "../../types/patient.js"; +import { organization, user } from "./auth.js"; + +// One row per patient, scoped to a clinic (organization). `fileNumber` (MRN) +// is the chat lookup key and is unique within an organization. Current vitals +// live as columns; the two headline sparkline series and the freeform alert +// list are stored as JSONB. Child collections are separate tables below. +export const patients = pgTable( + "patients", + { + id: uuid("id").primaryKey().defaultRandom(), + organizationId: text("organization_id") + .notNull() + .references(() => organization.id, { onDelete: "cascade" }), + fileNumber: text("file_number").notNull(), + name: text("name").notNull(), + age: integer("age").notNull(), + sex: text("sex").$type().notNull(), + pcp: text("pcp").notNull(), + status: text("status").$type().notNull(), + initials: text("initials").notNull(), + alerts: jsonb("alerts").$type().notNull(), + vitalsBp: text("vitals_bp").notNull(), + vitalsHr: text("vitals_hr").notNull(), + vitalsTemp: text("vitals_temp").notNull(), + vitalsSpo2: text("vitals_spo2").notNull(), + vitalsTakenAt: text("vitals_taken_at").notNull(), + vitalsTrend: jsonb("vitals_trend").$type().notNull(), + labTrend: jsonb("lab_trend").$type().notNull(), + createdBy: text("created_by").references(() => user.id, { + onDelete: "set null", + }), + createdAt: timestamp("created_at").defaultNow().notNull(), + updatedAt: timestamp("updated_at") + .defaultNow() + .$onUpdate(() => new Date()) + .notNull(), + }, + (t) => [ + uniqueIndex("patients_org_file_uidx").on(t.organizationId, t.fileNumber), + index("patients_org_idx").on(t.organizationId), + ], +); + +export const allergies = pgTable( + "patient_allergies", + { + id: uuid("id").primaryKey().defaultRandom(), + patientId: uuid("patient_id") + .notNull() + .references(() => patients.id, { onDelete: "cascade" }), + position: integer("position").notNull().default(0), + substance: text("substance").notNull(), + reaction: text("reaction").notNull(), + severity: text("severity").$type().notNull(), + }, + (t) => [index("allergies_patient_idx").on(t.patientId)], +); + +export const medications = pgTable( + "patient_medications", + { + id: uuid("id").primaryKey().defaultRandom(), + patientId: uuid("patient_id") + .notNull() + .references(() => patients.id, { onDelete: "cascade" }), + position: integer("position").notNull().default(0), + name: text("name").notNull(), + dose: text("dose").notNull(), + frequency: text("frequency").notNull(), + }, + (t) => [index("medications_patient_idx").on(t.patientId)], +); + +export const problems = pgTable( + "patient_problems", + { + id: uuid("id").primaryKey().defaultRandom(), + patientId: uuid("patient_id") + .notNull() + .references(() => patients.id, { onDelete: "cascade" }), + position: integer("position").notNull().default(0), + label: text("label").notNull(), + since: text("since").notNull(), + }, + (t) => [index("problems_patient_idx").on(t.patientId)], +); + +export const labs = pgTable( + "patient_labs", + { + id: uuid("id").primaryKey().defaultRandom(), + patientId: uuid("patient_id") + .notNull() + .references(() => patients.id, { onDelete: "cascade" }), + position: integer("position").notNull().default(0), + name: text("name").notNull(), + value: text("value").notNull(), + flag: text("flag").$type().notNull(), + takenAt: text("taken_at").notNull(), + }, + (t) => [index("labs_patient_idx").on(t.patientId)], +); + +export const encounters = pgTable( + "patient_encounters", + { + id: uuid("id").primaryKey().defaultRandom(), + patientId: uuid("patient_id") + .notNull() + .references(() => patients.id, { onDelete: "cascade" }), + position: integer("position").notNull().default(0), + date: text("date").notNull(), + type: text("type").notNull(), + provider: text("provider").notNull(), + summary: text("summary").notNull(), + }, + (t) => [index("encounters_patient_idx").on(t.patientId)], +); + +export const patientChildTables = { + allergies, + medications, + problems, + labs, + encounters, +} as const; diff --git a/backend/src/env.ts b/backend/src/env.ts new file mode 100644 index 0000000..a6b0a3b --- /dev/null +++ b/backend/src/env.ts @@ -0,0 +1,48 @@ +import "dotenv/config"; +import { z } from "zod"; + +// Defaults keep this module loadable even with no .env present (e.g. when the +// Better Auth / drizzle-kit CLIs introspect the config offline). Real values +// come from .env at runtime; production misconfiguration is caught below. +const schema = z.object({ + DATABASE_URL: z + .string() + .min(1) + .default("postgres://temetro:temetro@localhost:5432/temetro"), + BETTER_AUTH_SECRET: z.string().min(1).default("dev-insecure-secret-change-me"), + BETTER_AUTH_URL: z.string().min(1).default("http://localhost:4000"), + FRONTEND_URL: z.string().min(1).default("http://localhost:3000"), + PORT: z.coerce.number().int().positive().default(4000), + NODE_ENV: z + .enum(["development", "production", "test"]) + .default("development"), + SMTP_HOST: z.string().optional(), + SMTP_PORT: z.coerce.number().int().positive().optional(), + SMTP_USER: z.string().optional(), + SMTP_PASS: z.string().optional(), + SMTP_FROM: z.string().default("temetro "), +}); + +const parsed = schema.safeParse(process.env); + +if (!parsed.success) { + const lines = parsed.error.issues + .map((i) => ` - ${i.path.join(".") || "(root)"}: ${i.message}`) + .join("\n"); + console.error(`❌ Invalid environment variables:\n${lines}`); + process.exit(1); +} + +export const env = parsed.data; + +// Fail fast on dangerous production misconfiguration. +if (env.NODE_ENV === "production") { + if (env.BETTER_AUTH_SECRET === "dev-insecure-secret-change-me") { + console.error( + "❌ BETTER_AUTH_SECRET is unset in production. Generate one: openssl rand -base64 32", + ); + process.exit(1); + } +} + +export const isProd = env.NODE_ENV === "production"; diff --git a/backend/src/index.ts b/backend/src/index.ts new file mode 100644 index 0000000..3412d7e --- /dev/null +++ b/backend/src/index.ts @@ -0,0 +1,54 @@ +import { toNodeHandler } from "better-auth/node"; +import cors from "cors"; +import express from "express"; + +import { auth } from "./auth.js"; +import { env } from "./env.js"; +import { errorHandler, notFound } from "./middleware/error.js"; +import { patientsRouter } from "./routes/patients.js"; + +const app = express(); + +// Behind docker / a reverse proxy we trust forwarding headers for client IPs. +app.set("trust proxy", true); + +app.use( + cors({ + origin: env.FRONTEND_URL, + credentials: true, + }), +); + +// Better Auth derives the client IP from forwarding headers (used for rate +// limiting and audit). Behind a real proxy that header is already present; for +// direct connections (local dev) we backfill it from the socket so rate +// limiting still applies. +app.use((req, _res, next) => { + if (!req.headers["x-forwarded-for"]) { + const ip = req.socket?.remoteAddress; + if (ip) req.headers["x-forwarded-for"] = ip; + } + next(); +}); + +// Better Auth mounts its own handler. It MUST be registered before +// express.json() so it can read the raw request body. Express 5 requires a +// named wildcard ("*splat") rather than a bare "*". +app.all("/api/auth/*splat", toNodeHandler(auth)); + +app.use(express.json()); + +app.get("/health", (_req, res) => { + res.json({ status: "ok" }); +}); + +app.use("/api/patients", patientsRouter); + +app.use(notFound); +app.use(errorHandler); + +app.listen(env.PORT, () => { + console.log(`temetro backend listening on ${env.BETTER_AUTH_URL}`); + console.log(` • auth: /api/auth/* (frontend origin: ${env.FRONTEND_URL})`); + console.log(` • patients: /api/patients`); +}); diff --git a/backend/src/lib/access.ts b/backend/src/lib/access.ts new file mode 100644 index 0000000..d506115 --- /dev/null +++ b/backend/src/lib/access.ts @@ -0,0 +1,46 @@ +import { createAccessControl } from "better-auth/plugins/access"; +import { + adminAc, + defaultStatements, + memberAc, + ownerAc, +} from "better-auth/plugins/organization/access"; + +// RBAC for clinics (organizations). We extend Better Auth's default +// organization statements (organization / member / invitation / team) with a +// `patient` resource so roles can be granted fine-grained access to records. +export const statements = { + ...defaultStatements, + patient: ["read", "write", "delete"], +} as const; + +export const ac = createAccessControl(statements); + +// We keep Better Auth's default organization role names (owner / admin / +// member) so the creator role and default membership flows work unchanged, +// and add a read-only `viewer`. In the UI these read as Owner / Admin / +// Clinician (member) / Viewer. +// +// owner / admin: run the clinic AND have full access to patient records. +export const owner = ac.newRole({ + ...ownerAc.statements, + patient: ["read", "write", "delete"], +}); + +export const admin = ac.newRole({ + ...adminAc.statements, + patient: ["read", "write", "delete"], +}); + +// member (clinician): a regular member who can read and edit patient records. +export const member = ac.newRole({ + ...memberAc.statements, + patient: ["read", "write"], +}); + +// viewer: read-only access to patient records. +export const viewer = ac.newRole({ + patient: ["read"], +}); + +export const roles = { owner, admin, member, viewer }; diff --git a/backend/src/lib/email.ts b/backend/src/lib/email.ts new file mode 100644 index 0000000..78c76e7 --- /dev/null +++ b/backend/src/lib/email.ts @@ -0,0 +1,49 @@ +import nodemailer from "nodemailer"; + +import { env } from "../env.js"; + +type SendArgs = { + to: string; + subject: string; + text: string; + html?: string; +}; + +// Lazily build a transport. With SMTP_HOST configured we send real mail; +// otherwise we fall back to logging the message (and any links) to the +// server console — zero setup for local / open-source development. +const transport = env.SMTP_HOST + ? nodemailer.createTransport({ + host: env.SMTP_HOST, + port: env.SMTP_PORT ?? 587, + secure: (env.SMTP_PORT ?? 587) === 465, + auth: + env.SMTP_USER && env.SMTP_PASS + ? { user: env.SMTP_USER, pass: env.SMTP_PASS } + : undefined, + }) + : null; + +export async function sendEmail({ to, subject, text, html }: SendArgs): Promise { + if (!transport) { + console.info( + [ + "", + "✉️ [email:console] No SMTP configured — printing instead of sending.", + ` to: ${to}`, + ` subject: ${subject}`, + ` body: ${text}`, + "", + ].join("\n"), + ); + return; + } + + await transport.sendMail({ + from: env.SMTP_FROM, + to, + subject, + text, + html: html ?? text, + }); +} diff --git a/backend/src/lib/http-error.ts b/backend/src/lib/http-error.ts new file mode 100644 index 0000000..b9ed817 --- /dev/null +++ b/backend/src/lib/http-error.ts @@ -0,0 +1,9 @@ +export class HttpError extends Error { + constructor( + public status: number, + message: string, + ) { + super(message); + this.name = "HttpError"; + } +} diff --git a/backend/src/lib/patient-validation.ts b/backend/src/lib/patient-validation.ts new file mode 100644 index 0000000..de4e158 --- /dev/null +++ b/backend/src/lib/patient-validation.ts @@ -0,0 +1,71 @@ +import { z } from "zod"; + +const nonEmpty = z.string().trim().min(1); + +export const allergySchema = z.object({ + substance: nonEmpty, + reaction: nonEmpty, + severity: z.enum(["mild", "moderate", "severe"]), +}); + +export const medicationSchema = z.object({ + name: nonEmpty, + dose: nonEmpty, + frequency: nonEmpty, +}); + +export const problemSchema = z.object({ + label: nonEmpty, + since: nonEmpty, +}); + +export const labSchema = z.object({ + name: nonEmpty, + value: nonEmpty, + flag: z.enum(["normal", "high", "low", "critical"]), + takenAt: nonEmpty, +}); + +export const encounterSchema = z.object({ + date: nonEmpty, + type: nonEmpty, + provider: nonEmpty, + summary: nonEmpty, +}); + +export const vitalsSchema = z.object({ + bp: z.string(), + hr: z.string(), + temp: z.string(), + spo2: z.string(), + takenAt: z.string(), +}); + +export const trendSchema = z.object({ + label: z.string(), + unit: z.string(), + points: z.array(z.number()), +}); + +// A full patient payload — the frontend form sends the entire record on both +// create and edit, so the same schema covers both. +export const patientInputSchema = z.object({ + fileNumber: z.string().trim().regex(/^\d+$/, "File number must be digits"), + name: nonEmpty, + age: z.number().int().min(0).max(150), + sex: z.enum(["M", "F"]), + pcp: z.string(), + status: z.enum(["active", "inpatient", "discharged"]), + initials: z.string().trim().min(1).max(4), + allergies: z.array(allergySchema).default([]), + alerts: z.array(z.string()).default([]), + medications: z.array(medicationSchema).default([]), + problems: z.array(problemSchema).default([]), + vitals: vitalsSchema, + vitalsTrend: trendSchema, + labs: z.array(labSchema).default([]), + labTrend: trendSchema, + encounters: z.array(encounterSchema).default([]), +}); + +export type PatientInput = z.infer; diff --git a/backend/src/middleware/auth.ts b/backend/src/middleware/auth.ts new file mode 100644 index 0000000..6844f62 --- /dev/null +++ b/backend/src/middleware/auth.ts @@ -0,0 +1,98 @@ +import { fromNodeHeaders } from "better-auth/node"; +import { and, eq } from "drizzle-orm"; +import type { NextFunction, Request, Response } from "express"; + +import { auth } from "../auth.js"; +import { db } from "../db/index.js"; +import { member } from "../db/schema/auth.js"; +import { roles } from "../lib/access.js"; +import { HttpError } from "../lib/http-error.js"; + +// Validates the Better Auth session cookie and attaches the user + session. +export async function requireAuth( + req: Request, + _res: Response, + next: NextFunction, +): Promise { + try { + const data = await auth.api.getSession({ + headers: fromNodeHeaders(req.headers), + }); + if (!data?.session) { + throw new HttpError(401, "Authentication required."); + } + req.user = data.user; + req.session = data.session; + next(); + } catch (err) { + next(err); + } +} + +// Requires an active organization (clinic) and loads the caller's role in it. +// Must run after requireAuth. +export async function requireOrg( + req: Request, + _res: Response, + next: NextFunction, +): Promise { + try { + const orgId = req.session?.activeOrganizationId; + if (!orgId) { + throw new HttpError( + 403, + "No active clinic selected. Create or select a clinic first.", + ); + } + const [m] = await db + .select({ role: member.role }) + .from(member) + .where( + and(eq(member.organizationId, orgId), eq(member.userId, req.user!.id)), + ); + if (!m) { + throw new HttpError(403, "You are not a member of the active clinic."); + } + req.organizationId = orgId; + req.memberRole = m.role; + next(); + } catch (err) { + next(err); + } +} + +type PatientAction = "read" | "write" | "delete"; +type PermissionRequest = { patient?: PatientAction[] }; + +// Gates a route on a clinic permission, evaluated against the caller's role(s) +// using the shared access-control definitions. Must run after requireOrg. +export function requirePermission(permission: PermissionRequest) { + return async ( + req: Request, + _res: Response, + next: NextFunction, + ): Promise => { + try { + const names = String(req.memberRole ?? "") + .split(",") + .map((s) => s.trim()) + .filter(Boolean); + + let allowed = false; + for (const name of names) { + const role = roles[name as keyof typeof roles]; + if (role && (await role.authorize(permission)).success) { + allowed = true; + break; + } + } + + if (!allowed) { + throw new HttpError(403, "You don't have permission to do that."); + } + next(); + } catch (err) { + next(err); + } + }; +} diff --git a/backend/src/middleware/error.ts b/backend/src/middleware/error.ts new file mode 100644 index 0000000..721a4a6 --- /dev/null +++ b/backend/src/middleware/error.ts @@ -0,0 +1,27 @@ +import type { NextFunction, Request, Response } from "express"; +import { ZodError } from "zod"; + +import { HttpError } from "../lib/http-error.js"; + +export function notFound(_req: Request, res: Response): void { + res.status(404).json({ error: "Not found" }); +} + +// Express error handler (must take 4 args). +export function errorHandler( + err: unknown, + _req: Request, + res: Response, + _next: NextFunction, +): void { + if (err instanceof HttpError) { + res.status(err.status).json({ error: err.message }); + return; + } + if (err instanceof ZodError) { + res.status(400).json({ error: "Validation failed", details: err.issues }); + return; + } + console.error("[error]", err); + res.status(500).json({ error: "Internal server error" }); +} diff --git a/backend/src/migrate.ts b/backend/src/migrate.ts new file mode 100644 index 0000000..50539f3 --- /dev/null +++ b/backend/src/migrate.ts @@ -0,0 +1,18 @@ +import { migrate } from "drizzle-orm/node-postgres/migrator"; + +import { db, pool } from "./db/index.js"; + +// Applies the SQL migrations in ./drizzle at container/app startup. Uses the +// drizzle-orm runtime migrator (a production dependency) so no dev tooling is +// needed in the runtime image. +async function main(): Promise { + console.log("Applying database migrations…"); + await migrate(db, { migrationsFolder: "./drizzle" }); + console.log("Migrations up to date."); + await pool.end(); +} + +main().catch((err) => { + console.error("Migration failed:", err); + process.exit(1); +}); diff --git a/backend/src/routes/patients.ts b/backend/src/routes/patients.ts new file mode 100644 index 0000000..5137b75 --- /dev/null +++ b/backend/src/routes/patients.ts @@ -0,0 +1,98 @@ +import { Router } from "express"; + +import { HttpError } from "../lib/http-error.js"; +import { patientInputSchema } from "../lib/patient-validation.js"; +import { + requireAuth, + requireOrg, + requirePermission, +} from "../middleware/auth.js"; +import * as service from "../services/patients.js"; + +export const patientsRouter = Router(); + +// Every patient route requires a signed-in user with an active clinic. +patientsRouter.use(requireAuth, requireOrg); + +patientsRouter.get( + "/", + requirePermission({ patient: ["read"] }), + async (req, res, next) => { + try { + res.json(await service.listPatients(req.organizationId!)); + } catch (err) { + next(err); + } + }, +); + +patientsRouter.get( + "/:fileNumber", + requirePermission({ patient: ["read"] }), + async (req, res, next) => { + try { + const patient = await service.getPatient( + req.organizationId!, + req.params.fileNumber as string, + ); + if (!patient) throw new HttpError(404, "Patient not found."); + res.json(patient); + } catch (err) { + next(err); + } + }, +); + +patientsRouter.post( + "/", + requirePermission({ patient: ["write"] }), + async (req, res, next) => { + try { + const input = patientInputSchema.parse(req.body); + const created = await service.createPatient( + req.organizationId!, + req.user!.id, + input, + ); + res.status(201).json(created); + } catch (err) { + next(err); + } + }, +); + +patientsRouter.put( + "/:fileNumber", + requirePermission({ patient: ["write"] }), + async (req, res, next) => { + try { + const input = patientInputSchema.parse(req.body); + const updated = await service.updatePatient( + req.organizationId!, + req.params.fileNumber as string, + input, + ); + if (!updated) throw new HttpError(404, "Patient not found."); + res.json(updated); + } catch (err) { + next(err); + } + }, +); + +patientsRouter.delete( + "/:fileNumber", + requirePermission({ patient: ["delete"] }), + async (req, res, next) => { + try { + const ok = await service.deletePatient( + req.organizationId!, + req.params.fileNumber as string, + ); + if (!ok) throw new HttpError(404, "Patient not found."); + res.status(204).end(); + } catch (err) { + next(err); + } + }, +); diff --git a/backend/src/services/patients.ts b/backend/src/services/patients.ts new file mode 100644 index 0000000..27ea2ad --- /dev/null +++ b/backend/src/services/patients.ts @@ -0,0 +1,329 @@ +import { and, asc, eq, inArray } from "drizzle-orm"; + +import { db } from "../db/index.js"; +import { + allergies, + encounters, + labs, + medications, + patients, + problems, +} from "../db/schema/patients.js"; +import { HttpError } from "../lib/http-error.js"; +import type { PatientInput } from "../lib/patient-validation.js"; +import type { + Allergy, + Encounter, + Lab, + Medication, + Patient, + Problem, +} from "../types/patient.js"; + +type PatientRow = typeof patients.$inferSelect; + +type Children = { + allergies: Allergy[]; + medications: Medication[]; + problems: Problem[]; + labs: Lab[]; + encounters: Encounter[]; +}; + +const emptyChildren = (): Children => ({ + allergies: [], + medications: [], + problems: [], + labs: [], + encounters: [], +}); + +function toPatient(row: PatientRow, children: Children): Patient { + return { + fileNumber: row.fileNumber, + name: row.name, + age: row.age, + sex: row.sex, + pcp: row.pcp, + status: row.status, + initials: row.initials, + allergies: children.allergies, + alerts: row.alerts, + medications: children.medications, + problems: children.problems, + vitals: { + bp: row.vitalsBp, + hr: row.vitalsHr, + temp: row.vitalsTemp, + spo2: row.vitalsSpo2, + takenAt: row.vitalsTakenAt, + }, + vitalsTrend: row.vitalsTrend, + labs: children.labs, + labTrend: row.labTrend, + encounters: children.encounters, + }; +} + +// Input children are already in the canonical Patient sub-shapes. +function childrenFromInput(input: PatientInput): Children { + return { + allergies: input.allergies, + medications: input.medications, + problems: input.problems, + labs: input.labs, + encounters: input.encounters, + }; +} + +function patientColumns(orgId: string, input: PatientInput, createdBy?: string) { + return { + organizationId: orgId, + fileNumber: input.fileNumber, + name: input.name, + age: input.age, + sex: input.sex, + pcp: input.pcp, + status: input.status, + initials: input.initials, + alerts: input.alerts, + vitalsBp: input.vitals.bp, + vitalsHr: input.vitals.hr, + vitalsTemp: input.vitals.temp, + vitalsSpo2: input.vitals.spo2, + vitalsTakenAt: input.vitals.takenAt, + vitalsTrend: input.vitalsTrend, + labTrend: input.labTrend, + ...(createdBy ? { createdBy } : {}), + }; +} + +// Loads and groups child rows for a set of patients in one round-trip each. +async function loadChildren( + patientIds: string[], +): Promise> { + const grouped = new Map(); + for (const id of patientIds) grouped.set(id, emptyChildren()); + if (patientIds.length === 0) return grouped; + + const [al, me, pr, la, en] = await Promise.all([ + db + .select() + .from(allergies) + .where(inArray(allergies.patientId, patientIds)) + .orderBy(asc(allergies.position)), + db + .select() + .from(medications) + .where(inArray(medications.patientId, patientIds)) + .orderBy(asc(medications.position)), + db + .select() + .from(problems) + .where(inArray(problems.patientId, patientIds)) + .orderBy(asc(problems.position)), + db + .select() + .from(labs) + .where(inArray(labs.patientId, patientIds)) + .orderBy(asc(labs.position)), + db + .select() + .from(encounters) + .where(inArray(encounters.patientId, patientIds)) + .orderBy(asc(encounters.position)), + ]); + + for (const a of al) + grouped.get(a.patientId)?.allergies.push({ + substance: a.substance, + reaction: a.reaction, + severity: a.severity, + }); + for (const m of me) + grouped.get(m.patientId)?.medications.push({ + name: m.name, + dose: m.dose, + frequency: m.frequency, + }); + for (const p of pr) + grouped.get(p.patientId)?.problems.push({ label: p.label, since: p.since }); + for (const l of la) + grouped.get(l.patientId)?.labs.push({ + name: l.name, + value: l.value, + flag: l.flag, + takenAt: l.takenAt, + }); + for (const e of en) + grouped.get(e.patientId)?.encounters.push({ + date: e.date, + type: e.type, + provider: e.provider, + summary: e.summary, + }); + + return grouped; +} + +type Tx = Parameters[0]>[0]; + +async function insertChildren( + tx: Tx, + patientId: string, + input: PatientInput, +): Promise { + if (input.allergies.length) + await tx + .insert(allergies) + .values(input.allergies.map((a, i) => ({ patientId, position: i, ...a }))); + if (input.medications.length) + await tx + .insert(medications) + .values( + input.medications.map((m, i) => ({ patientId, position: i, ...m })), + ); + if (input.problems.length) + await tx + .insert(problems) + .values(input.problems.map((p, i) => ({ patientId, position: i, ...p }))); + if (input.labs.length) + await tx + .insert(labs) + .values(input.labs.map((l, i) => ({ patientId, position: i, ...l }))); + if (input.encounters.length) + await tx + .insert(encounters) + .values( + input.encounters.map((e, i) => ({ patientId, position: i, ...e })), + ); +} + +function isUniqueViolation(err: unknown): boolean { + // drizzle wraps the driver error, so the pg error code (23505) may sit on + // the error itself or on its `cause`. + const candidates = [err, (err as { cause?: unknown })?.cause]; + return candidates.some( + (e) => + typeof e === "object" && + e !== null && + "code" in e && + (e as { code?: string }).code === "23505", + ); +} + +export async function listPatients(orgId: string): Promise { + const rows = await db + .select() + .from(patients) + .where(eq(patients.organizationId, orgId)) + .orderBy(asc(patients.name)); + const children = await loadChildren(rows.map((r) => r.id)); + return rows.map((r) => toPatient(r, children.get(r.id) ?? emptyChildren())); +} + +export async function getPatient( + orgId: string, + fileNumber: string, +): Promise { + const [row] = await db + .select() + .from(patients) + .where( + and( + eq(patients.organizationId, orgId), + eq(patients.fileNumber, fileNumber), + ), + ); + if (!row) return null; + const children = await loadChildren([row.id]); + return toPatient(row, children.get(row.id) ?? emptyChildren()); +} + +export async function createPatient( + orgId: string, + userId: string, + input: PatientInput, +): Promise { + try { + return await db.transaction(async (tx) => { + const [row] = await tx + .insert(patients) + .values(patientColumns(orgId, input, userId)) + .returning(); + await insertChildren(tx, row!.id, input); + return toPatient(row!, childrenFromInput(input)); + }); + } catch (err) { + if (isUniqueViolation(err)) { + throw new HttpError( + 409, + `A patient with file number ${input.fileNumber} already exists in this clinic.`, + ); + } + throw err; + } +} + +export async function updatePatient( + orgId: string, + fileNumber: string, + input: PatientInput, +): Promise { + try { + return await db.transaction(async (tx) => { + const [existing] = await tx + .select({ id: patients.id }) + .from(patients) + .where( + and( + eq(patients.organizationId, orgId), + eq(patients.fileNumber, fileNumber), + ), + ); + if (!existing) return null; + + const [row] = await tx + .update(patients) + .set(patientColumns(orgId, input)) + .where(eq(patients.id, existing.id)) + .returning(); + + // Replace child collections wholesale (form submits the full record). + await Promise.all([ + tx.delete(allergies).where(eq(allergies.patientId, existing.id)), + tx.delete(medications).where(eq(medications.patientId, existing.id)), + tx.delete(problems).where(eq(problems.patientId, existing.id)), + tx.delete(labs).where(eq(labs.patientId, existing.id)), + tx.delete(encounters).where(eq(encounters.patientId, existing.id)), + ]); + await insertChildren(tx, existing.id, input); + + return toPatient(row!, childrenFromInput(input)); + }); + } catch (err) { + if (isUniqueViolation(err)) { + throw new HttpError( + 409, + `A patient with file number ${input.fileNumber} already exists in this clinic.`, + ); + } + throw err; + } +} + +export async function deletePatient( + orgId: string, + fileNumber: string, +): Promise { + const deleted = await db + .delete(patients) + .where( + and( + eq(patients.organizationId, orgId), + eq(patients.fileNumber, fileNumber), + ), + ) + .returning({ id: patients.id }); + return deleted.length > 0; +} diff --git a/backend/src/types/express.d.ts b/backend/src/types/express.d.ts new file mode 100644 index 0000000..5bd74a5 --- /dev/null +++ b/backend/src/types/express.d.ts @@ -0,0 +1,22 @@ +// Request properties populated by our auth middleware. +declare global { + namespace Express { + interface Request { + user?: { + id: string; + email: string; + name: string; + emailVerified: boolean; + }; + session?: { + id: string; + userId: string; + activeOrganizationId?: string | null; + }; + organizationId?: string; + memberRole?: string; + } + } +} + +export {}; diff --git a/backend/src/types/patient.ts b/backend/src/types/patient.ts new file mode 100644 index 0000000..0f39618 --- /dev/null +++ b/backend/src/types/patient.ts @@ -0,0 +1,72 @@ +// Canonical patient shape — mirrors frontend/lib/patients.ts so API responses +// can be consumed by the chat record cards without any reshaping on the client. + +export type AllergySeverity = "mild" | "moderate" | "severe"; +export type LabFlag = "normal" | "high" | "low" | "critical"; +export type Sex = "M" | "F"; +export type PatientStatus = "active" | "inpatient" | "discharged"; + +export type Allergy = { + substance: string; + reaction: string; + severity: AllergySeverity; +}; + +export type Medication = { + name: string; + dose: string; + frequency: string; +}; + +export type Problem = { + label: string; + since: string; +}; + +export type Vitals = { + bp: string; + hr: string; + temp: string; + spo2: string; + takenAt: string; +}; + +export type Lab = { + name: string; + value: string; + flag: LabFlag; + takenAt: string; +}; + +export type Encounter = { + date: string; + type: string; + provider: string; + summary: string; +}; + +// A short series for a sparkline; `points` are most-recent-last. +export type Trend = { + label: string; + unit: string; + points: number[]; +}; + +export type Patient = { + fileNumber: string; // MRN / file number, e.g. "10293" + name: string; + age: number; + sex: Sex; + pcp: string; // primary care provider + status: PatientStatus; + initials: string; // for AvatarFallback + allergies: Allergy[]; + alerts: string[]; + medications: Medication[]; + problems: Problem[]; + vitals: Vitals; + vitalsTrend: Trend; // headline vital plotted as a sparkline + labs: Lab[]; + labTrend: Trend; // headline lab plotted as a sparkline + encounters: Encounter[]; +}; diff --git a/backend/tsconfig.json b/backend/tsconfig.json new file mode 100644 index 0000000..9726eba --- /dev/null +++ b/backend/tsconfig.json @@ -0,0 +1,20 @@ +{ + "compilerOptions": { + "target": "ES2022", + "module": "NodeNext", + "moduleResolution": "NodeNext", + "lib": ["ES2022"], + "outDir": "dist", + "rootDir": "src", + "strict": true, + "noUncheckedIndexedAccess": true, + "esModuleInterop": true, + "skipLibCheck": true, + "forceConsistentCasingInFileNames": true, + "resolveJsonModule": true, + "declaration": false, + "sourceMap": true + }, + "include": ["src/**/*.ts"], + "exclude": ["node_modules", "dist"] +}