First implementation of K2V (#293)

**Specification:**

View spec at [this URL](https://git.deuxfleurs.fr/Deuxfleurs/garage/src/branch/k2v/doc/drafts/k2v-spec.md)

- [x] Specify the structure of K2V triples
- [x] Specify the DVVS format used for causality detection
- [x] Specify the K2V index (just a counter of number of values per partition key)
- [x] Specify single-item endpoints: ReadItem, InsertItem, DeleteItem
- [x] Specify index endpoint: ReadIndex
- [x] Specify multi-item endpoints: InsertBatch, ReadBatch, DeleteBatch
- [x] Move to JSON objects instead of tuples
- [x] Specify endpoints for polling for updates on single values (PollItem)

**Implementation:**

- [x] Table for K2V items, causal contexts
- [x] Indexing mechanism and table for K2V index
- [x] Make API handlers a bit more generic
- [x] K2V API endpoint
- [x] K2V API router
- [x] ReadItem
- [x] InsertItem
- [x] DeleteItem
- [x] PollItem
- [x] ReadIndex
- [x] InsertBatch
- [x] ReadBatch
- [x] DeleteBatch

**Testing:**

- [x] Just a simple Python script that does some requests to check visually that things are going right (does not contain parsing of results or assertions on returned values)
- [x] Actual tests:
  - [x] Adapt testing framework
  - [x] Simple test with InsertItem + ReadItem
  - [x] Test with several Insert/Read/DeleteItem + ReadIndex
  - [x] Test all combinations of return formats for ReadItem
  - [x] Test with ReadBatch, InsertBatch, DeleteBatch
  - [x] Test with PollItem
  - [x] Test error codes
- [ ] Fix most broken stuff
  - [x] test PollItem broken randomly
  - [x] when invalid causality tokens are given, errors should be 4xx not 5xx

**Improvements:**

- [x] Descending range queries
  - [x] Specify
  - [x] Implement
  - [x] Add test
- [x] Batch updates to index counter
- [x] Put K2V behind `k2v` feature flag

Co-authored-by: Alex Auvolat <alex@adnab.me>
Reviewed-on: https://git.deuxfleurs.fr/Deuxfleurs/garage/pulls/293
Co-authored-by: Alex <alex@adnab.me>
Co-committed-by: Alex <alex@adnab.me>
This commit is contained in:
Alex
2022-05-10 13:16:57 +02:00
parent def78c5e6f
commit 5768bf3622
83 changed files with 6491 additions and 1226 deletions
+96
View File
@@ -0,0 +1,96 @@
use std::collections::BTreeMap;
use std::convert::TryInto;
use serde::{Deserialize, Serialize};
use garage_util::data::*;
/// Node IDs used in K2V are u64 integers that are the abbreviation
/// of full Garage node IDs which are 256-bit UUIDs.
pub type K2VNodeId = u64;
pub fn make_node_id(node_id: Uuid) -> K2VNodeId {
let mut tmp = [0u8; 8];
tmp.copy_from_slice(&node_id.as_slice()[..8]);
u64::from_be_bytes(tmp)
}
#[derive(PartialEq, Debug, Serialize, Deserialize)]
pub struct CausalContext {
pub vector_clock: BTreeMap<K2VNodeId, u64>,
}
impl CausalContext {
/// Empty causality context
pub fn new_empty() -> Self {
Self {
vector_clock: BTreeMap::new(),
}
}
/// Make binary representation and encode in base64
pub fn serialize(&self) -> String {
let mut ints = Vec::with_capacity(2 * self.vector_clock.len());
for (node, time) in self.vector_clock.iter() {
ints.push(*node);
ints.push(*time);
}
let checksum = ints.iter().fold(0, |acc, v| acc ^ *v);
let mut bytes = u64::to_be_bytes(checksum).to_vec();
for i in ints {
bytes.extend(u64::to_be_bytes(i));
}
base64::encode_config(bytes, base64::URL_SAFE_NO_PAD)
}
/// Parse from base64-encoded binary representation
pub fn parse(s: &str) -> Result<Self, String> {
let bytes = base64::decode_config(s, base64::URL_SAFE_NO_PAD)
.map_err(|e| format!("bad causality token base64: {}", e))?;
if bytes.len() % 16 != 8 || bytes.len() < 8 {
return Err("bad causality token length".into());
}
let checksum = u64::from_be_bytes(bytes[..8].try_into().unwrap());
let mut ret = CausalContext {
vector_clock: BTreeMap::new(),
};
for i in 0..(bytes.len() / 16) {
let node_id = u64::from_be_bytes(bytes[8 + i * 16..16 + i * 16].try_into().unwrap());
let time = u64::from_be_bytes(bytes[16 + i * 16..24 + i * 16].try_into().unwrap());
ret.vector_clock.insert(node_id, time);
}
let check = ret.vector_clock.iter().fold(0, |acc, (n, t)| acc ^ *n ^ *t);
if check != checksum {
return Err("bad causality token checksum".into());
}
Ok(ret)
}
/// Check if this causal context contains newer items than another one
pub fn is_newer_than(&self, other: &Self) -> bool {
self.vector_clock
.iter()
.any(|(k, v)| v > other.vector_clock.get(k).unwrap_or(&0))
}
}
#[cfg(test)]
mod tests {
use super::*;
#[test]
fn test_causality_token_serialization() {
let ct = CausalContext {
vector_clock: [(4, 42), (1928131023, 76), (0xefc0c1c47f9de433, 2)]
.iter()
.cloned()
.collect(),
};
assert_eq!(CausalContext::parse(&ct.serialize()).unwrap(), ct);
}
}
+20
View File
@@ -0,0 +1,20 @@
use garage_util::data::*;
use crate::index_counter::*;
pub const ENTRIES: &str = "entries";
pub const CONFLICTS: &str = "conflicts";
pub const VALUES: &str = "values";
pub const BYTES: &str = "bytes";
#[derive(PartialEq, Clone)]
pub struct K2VCounterTable;
impl CounterSchema for K2VCounterTable {
const NAME: &'static str = "k2v_index_counter";
// Partition key = bucket id
type P = Uuid;
// Sort key = K2V item's partition key
type S = String;
}
+291
View File
@@ -0,0 +1,291 @@
use serde::{Deserialize, Serialize};
use std::collections::BTreeMap;
use std::sync::Arc;
use garage_util::data::*;
use garage_table::crdt::*;
use garage_table::*;
use crate::index_counter::*;
use crate::k2v::causality::*;
use crate::k2v::counter_table::*;
use crate::k2v::poll::*;
#[derive(PartialEq, Clone, Debug, Serialize, Deserialize)]
pub struct K2VItem {
pub partition: K2VItemPartition,
pub sort_key: String,
items: BTreeMap<K2VNodeId, DvvsEntry>,
}
#[derive(PartialEq, Clone, Debug, Serialize, Deserialize, Hash, Eq)]
pub struct K2VItemPartition {
pub bucket_id: Uuid,
pub partition_key: String,
}
#[derive(PartialEq, Clone, Debug, Serialize, Deserialize)]
struct DvvsEntry {
t_discard: u64,
values: Vec<(u64, DvvsValue)>,
}
#[derive(PartialEq, Clone, Debug, Serialize, Deserialize)]
pub enum DvvsValue {
Value(#[serde(with = "serde_bytes")] Vec<u8>),
Deleted,
}
impl K2VItem {
/// Creates a new K2VItem when no previous entry existed in the db
pub fn new(bucket_id: Uuid, partition_key: String, sort_key: String) -> Self {
Self {
partition: K2VItemPartition {
bucket_id,
partition_key,
},
sort_key,
items: BTreeMap::new(),
}
}
/// Updates a K2VItem with a new value or a deletion event
pub fn update(
&mut self,
this_node: Uuid,
context: &Option<CausalContext>,
new_value: DvvsValue,
) {
if let Some(context) = context {
for (node, t_discard) in context.vector_clock.iter() {
if let Some(e) = self.items.get_mut(node) {
e.t_discard = std::cmp::max(e.t_discard, *t_discard);
} else {
self.items.insert(
*node,
DvvsEntry {
t_discard: *t_discard,
values: vec![],
},
);
}
}
}
self.discard();
let node_id = make_node_id(this_node);
let e = self.items.entry(node_id).or_insert(DvvsEntry {
t_discard: 0,
values: vec![],
});
let t_prev = e.max_time();
e.values.push((t_prev + 1, new_value));
}
/// Extract the causality context of a K2V Item
pub fn causal_context(&self) -> CausalContext {
let mut cc = CausalContext::new_empty();
for (node, ent) in self.items.iter() {
cc.vector_clock.insert(*node, ent.max_time());
}
cc
}
/// Extract the list of values
pub fn values(&'_ self) -> Vec<&'_ DvvsValue> {
let mut ret = vec![];
for (_, ent) in self.items.iter() {
for (_, v) in ent.values.iter() {
if !ret.contains(&v) {
ret.push(v);
}
}
}
ret
}
fn discard(&mut self) {
for (_, ent) in self.items.iter_mut() {
ent.discard();
}
}
// returns counters: (non-deleted entries, conflict entries, non-tombstone values, bytes used)
fn stats(&self) -> (i64, i64, i64, i64) {
let values = self.values();
let n_entries = if self.is_tombstone() { 0 } else { 1 };
let n_conflicts = if values.len() > 1 { 1 } else { 0 };
let n_values = values
.iter()
.filter(|v| matches!(v, DvvsValue::Value(_)))
.count() as i64;
let n_bytes = values
.iter()
.map(|v| match v {
DvvsValue::Deleted => 0,
DvvsValue::Value(v) => v.len() as i64,
})
.sum();
(n_entries, n_conflicts, n_values, n_bytes)
}
}
impl DvvsEntry {
fn max_time(&self) -> u64 {
self.values
.iter()
.fold(self.t_discard, |acc, (vts, _)| std::cmp::max(acc, *vts))
}
fn discard(&mut self) {
self.values = std::mem::take(&mut self.values)
.into_iter()
.filter(|(t, _)| *t > self.t_discard)
.collect::<Vec<_>>();
}
}
impl Crdt for K2VItem {
fn merge(&mut self, other: &Self) {
for (node, e2) in other.items.iter() {
if let Some(e) = self.items.get_mut(node) {
e.merge(e2);
} else {
self.items.insert(*node, e2.clone());
}
}
}
}
impl Crdt for DvvsEntry {
fn merge(&mut self, other: &Self) {
self.t_discard = std::cmp::max(self.t_discard, other.t_discard);
self.discard();
let t_max = self.max_time();
for (vt, vv) in other.values.iter() {
if *vt > t_max {
self.values.push((*vt, vv.clone()));
}
}
}
}
impl PartitionKey for K2VItemPartition {
fn hash(&self) -> Hash {
use blake2::{Blake2b, Digest};
let mut hasher = Blake2b::new();
hasher.update(self.bucket_id.as_slice());
hasher.update(self.partition_key.as_bytes());
let mut hash = [0u8; 32];
hash.copy_from_slice(&hasher.finalize()[..32]);
hash.into()
}
}
impl Entry<K2VItemPartition, String> for K2VItem {
fn partition_key(&self) -> &K2VItemPartition {
&self.partition
}
fn sort_key(&self) -> &String {
&self.sort_key
}
fn is_tombstone(&self) -> bool {
self.values()
.iter()
.all(|v| matches!(v, DvvsValue::Deleted))
}
}
pub struct K2VItemTable {
pub(crate) counter_table: Arc<IndexCounter<K2VCounterTable>>,
pub(crate) subscriptions: Arc<SubscriptionManager>,
}
#[derive(Clone, Copy, Debug, Serialize, Deserialize)]
pub struct ItemFilter {
pub exclude_only_tombstones: bool,
pub conflicts_only: bool,
}
impl TableSchema for K2VItemTable {
const TABLE_NAME: &'static str = "k2v_item";
type P = K2VItemPartition;
type S = String;
type E = K2VItem;
type Filter = ItemFilter;
fn updated(&self, old: Option<&Self::E>, new: Option<&Self::E>) {
// 1. Count
let (old_entries, old_conflicts, old_values, old_bytes) = match old {
None => (0, 0, 0, 0),
Some(e) => e.stats(),
};
let (new_entries, new_conflicts, new_values, new_bytes) = match new {
None => (0, 0, 0, 0),
Some(e) => e.stats(),
};
let count_pk = old
.map(|e| e.partition.bucket_id)
.unwrap_or_else(|| new.unwrap().partition.bucket_id);
let count_sk = old
.map(|e| &e.partition.partition_key)
.unwrap_or_else(|| &new.unwrap().partition.partition_key);
if let Err(e) = self.counter_table.count(
&count_pk,
count_sk,
&[
(ENTRIES, new_entries - old_entries),
(CONFLICTS, new_conflicts - old_conflicts),
(VALUES, new_values - old_values),
(BYTES, new_bytes - old_bytes),
],
) {
error!("Could not update K2V counter for bucket {:?} partition {}; counts will now be inconsistent. {}", count_pk, count_sk, e);
}
// 2. Notify
if let Some(new_ent) = new {
self.subscriptions.notify(new_ent);
}
}
#[allow(clippy::nonminimal_bool)]
fn matches_filter(entry: &Self::E, filter: &Self::Filter) -> bool {
let v = entry.values();
!(filter.conflicts_only && v.len() < 2)
&& !(filter.exclude_only_tombstones && entry.is_tombstone())
}
}
#[cfg(test)]
mod tests {
use super::*;
#[test]
fn test_dvvsentry_merge_simple() {
let e1 = DvvsEntry {
t_discard: 4,
values: vec![
(5, DvvsValue::Value(vec![15])),
(6, DvvsValue::Value(vec![16])),
],
};
let e2 = DvvsEntry {
t_discard: 5,
values: vec![(6, DvvsValue::Value(vec![16])), (7, DvvsValue::Deleted)],
};
let mut e3 = e1.clone();
e3.merge(&e2);
assert_eq!(e2, e3);
}
}
+7
View File
@@ -0,0 +1,7 @@
pub mod causality;
pub mod counter_table;
pub mod item_table;
pub mod poll;
pub mod rpc;
+50
View File
@@ -0,0 +1,50 @@
use std::collections::HashMap;
use std::sync::Mutex;
use serde::{Deserialize, Serialize};
use tokio::sync::broadcast;
use crate::k2v::item_table::*;
#[derive(Debug, Hash, Clone, PartialEq, Eq, Serialize, Deserialize)]
pub struct PollKey {
pub partition: K2VItemPartition,
pub sort_key: String,
}
#[derive(Default)]
pub struct SubscriptionManager {
subscriptions: Mutex<HashMap<PollKey, broadcast::Sender<K2VItem>>>,
}
impl SubscriptionManager {
pub fn new() -> Self {
Self::default()
}
pub fn subscribe(&self, key: &PollKey) -> broadcast::Receiver<K2VItem> {
let mut subs = self.subscriptions.lock().unwrap();
if let Some(s) = subs.get(key) {
s.subscribe()
} else {
let (tx, rx) = broadcast::channel(8);
subs.insert(key.clone(), tx);
rx
}
}
pub fn notify(&self, item: &K2VItem) {
let key = PollKey {
partition: item.partition.clone(),
sort_key: item.sort_key.clone(),
};
let mut subs = self.subscriptions.lock().unwrap();
if let Some(s) = subs.get(&key) {
if s.send(item.clone()).is_err() {
// no more subscribers, remove channel from here
// (we will re-create it later if we need to subscribe again)
subs.remove(&key);
}
}
}
}
+343
View File
@@ -0,0 +1,343 @@
//! Module that implements RPCs specific to K2V.
//! This is necessary for insertions into the K2V store,
//! as they have to be transmitted to one of the nodes responsible
//! for storing the entry to be processed (the API entry
//! node does not process the entry directly, as this would
//! mean the vector clock gets much larger than needed).
use std::collections::HashMap;
use std::sync::Arc;
use std::time::Duration;
use async_trait::async_trait;
use futures::stream::FuturesUnordered;
use futures::StreamExt;
use serde::{Deserialize, Serialize};
use tokio::select;
use garage_util::crdt::*;
use garage_util::data::*;
use garage_util::error::*;
use garage_rpc::system::System;
use garage_rpc::*;
use garage_table::replication::{TableReplication, TableShardedReplication};
use garage_table::table::TABLE_RPC_TIMEOUT;
use garage_table::{PartitionKey, Table};
use crate::k2v::causality::*;
use crate::k2v::item_table::*;
use crate::k2v::poll::*;
/// RPC messages for K2V
#[derive(Debug, Serialize, Deserialize)]
enum K2VRpc {
Ok,
InsertItem(InsertedItem),
InsertManyItems(Vec<InsertedItem>),
PollItem {
key: PollKey,
causal_context: CausalContext,
timeout_msec: u64,
},
PollItemResponse(Option<K2VItem>),
}
#[derive(Debug, Serialize, Deserialize)]
struct InsertedItem {
partition: K2VItemPartition,
sort_key: String,
causal_context: Option<CausalContext>,
value: DvvsValue,
}
impl Rpc for K2VRpc {
type Response = Result<K2VRpc, Error>;
}
/// The block manager, handling block exchange between nodes, and block storage on local node
pub struct K2VRpcHandler {
system: Arc<System>,
item_table: Arc<Table<K2VItemTable, TableShardedReplication>>,
endpoint: Arc<Endpoint<K2VRpc, Self>>,
subscriptions: Arc<SubscriptionManager>,
}
impl K2VRpcHandler {
pub fn new(
system: Arc<System>,
item_table: Arc<Table<K2VItemTable, TableShardedReplication>>,
subscriptions: Arc<SubscriptionManager>,
) -> Arc<Self> {
let endpoint = system.netapp.endpoint("garage_model/k2v/Rpc".to_string());
let rpc_handler = Arc::new(Self {
system,
item_table,
endpoint,
subscriptions,
});
rpc_handler.endpoint.set_handler(rpc_handler.clone());
rpc_handler
}
// ---- public interface ----
pub async fn insert(
&self,
bucket_id: Uuid,
partition_key: String,
sort_key: String,
causal_context: Option<CausalContext>,
value: DvvsValue,
) -> Result<(), Error> {
let partition = K2VItemPartition {
bucket_id,
partition_key,
};
let mut who = self
.item_table
.data
.replication
.write_nodes(&partition.hash());
who.sort();
self.system
.rpc
.try_call_many(
&self.endpoint,
&who[..],
K2VRpc::InsertItem(InsertedItem {
partition,
sort_key,
causal_context,
value,
}),
RequestStrategy::with_priority(PRIO_NORMAL)
.with_quorum(1)
.with_timeout(TABLE_RPC_TIMEOUT)
.interrupt_after_quorum(true),
)
.await?;
Ok(())
}
pub async fn insert_batch(
&self,
bucket_id: Uuid,
items: Vec<(String, String, Option<CausalContext>, DvvsValue)>,
) -> Result<(), Error> {
let n_items = items.len();
let mut call_list: HashMap<_, Vec<_>> = HashMap::new();
for (partition_key, sort_key, causal_context, value) in items {
let partition = K2VItemPartition {
bucket_id,
partition_key,
};
let mut who = self
.item_table
.data
.replication
.write_nodes(&partition.hash());
who.sort();
call_list.entry(who).or_default().push(InsertedItem {
partition,
sort_key,
causal_context,
value,
});
}
debug!(
"K2V insert_batch: {} requests to insert {} items",
call_list.len(),
n_items
);
let call_futures = call_list.into_iter().map(|(nodes, items)| async move {
let resp = self
.system
.rpc
.try_call_many(
&self.endpoint,
&nodes[..],
K2VRpc::InsertManyItems(items),
RequestStrategy::with_priority(PRIO_NORMAL)
.with_quorum(1)
.with_timeout(TABLE_RPC_TIMEOUT)
.interrupt_after_quorum(true),
)
.await?;
Ok::<_, Error>((nodes, resp))
});
let mut resps = call_futures.collect::<FuturesUnordered<_>>();
while let Some(resp) = resps.next().await {
resp?;
}
Ok(())
}
pub async fn poll(
&self,
bucket_id: Uuid,
partition_key: String,
sort_key: String,
causal_context: CausalContext,
timeout_msec: u64,
) -> Result<Option<K2VItem>, Error> {
let poll_key = PollKey {
partition: K2VItemPartition {
bucket_id,
partition_key,
},
sort_key,
};
let nodes = self
.item_table
.data
.replication
.write_nodes(&poll_key.partition.hash());
let resps = self
.system
.rpc
.try_call_many(
&self.endpoint,
&nodes[..],
K2VRpc::PollItem {
key: poll_key,
causal_context,
timeout_msec,
},
RequestStrategy::with_priority(PRIO_NORMAL)
.with_quorum(self.item_table.data.replication.read_quorum())
.with_timeout(Duration::from_millis(timeout_msec) + TABLE_RPC_TIMEOUT),
)
.await?;
let mut resp: Option<K2VItem> = None;
for v in resps {
match v {
K2VRpc::PollItemResponse(Some(x)) => {
if let Some(y) = &mut resp {
y.merge(&x);
} else {
resp = Some(x);
}
}
K2VRpc::PollItemResponse(None) => {
return Ok(None);
}
v => return Err(Error::unexpected_rpc_message(v)),
}
}
Ok(resp)
}
// ---- internal handlers ----
async fn handle_insert(&self, item: &InsertedItem) -> Result<K2VRpc, Error> {
let new = self.local_insert(item)?;
// Propagate to rest of network
if let Some(updated) = new {
self.item_table.insert(&updated).await?;
}
Ok(K2VRpc::Ok)
}
async fn handle_insert_many(&self, items: &[InsertedItem]) -> Result<K2VRpc, Error> {
let mut updated_vec = vec![];
for item in items {
let new = self.local_insert(item)?;
if let Some(updated) = new {
updated_vec.push(updated);
}
}
// Propagate to rest of network
if !updated_vec.is_empty() {
self.item_table.insert_many(&updated_vec).await?;
}
Ok(K2VRpc::Ok)
}
fn local_insert(&self, item: &InsertedItem) -> Result<Option<K2VItem>, Error> {
let tree_key = self
.item_table
.data
.tree_key(&item.partition, &item.sort_key);
self.item_table
.data
.update_entry_with(&tree_key[..], |ent| {
let mut ent = ent.unwrap_or_else(|| {
K2VItem::new(
item.partition.bucket_id,
item.partition.partition_key.clone(),
item.sort_key.clone(),
)
});
ent.update(self.system.id, &item.causal_context, item.value.clone());
ent
})
}
async fn handle_poll(&self, key: &PollKey, ct: &CausalContext) -> Result<K2VItem, Error> {
let mut chan = self.subscriptions.subscribe(key);
let mut value = self
.item_table
.data
.read_entry(&key.partition, &key.sort_key)?
.map(|bytes| self.item_table.data.decode_entry(&bytes[..]))
.transpose()?
.unwrap_or_else(|| {
K2VItem::new(
key.partition.bucket_id,
key.partition.partition_key.clone(),
key.sort_key.clone(),
)
});
while !value.causal_context().is_newer_than(ct) {
value = chan.recv().await?;
}
Ok(value)
}
}
#[async_trait]
impl EndpointHandler<K2VRpc> for K2VRpcHandler {
async fn handle(self: &Arc<Self>, message: &K2VRpc, _from: NodeID) -> Result<K2VRpc, Error> {
match message {
K2VRpc::InsertItem(item) => self.handle_insert(item).await,
K2VRpc::InsertManyItems(items) => self.handle_insert_many(&items[..]).await,
K2VRpc::PollItem {
key,
causal_context,
timeout_msec,
} => {
let delay = tokio::time::sleep(Duration::from_millis(*timeout_msec));
select! {
ret = self.handle_poll(key, causal_context) => ret.map(Some).map(K2VRpc::PollItemResponse),
_ = delay => Ok(K2VRpc::PollItemResponse(None)),
}
}
m => Err(Error::unexpected_rpc_message(m)),
}
}
}