fix(deploy,db,handler): close fresh-clone postgres init failure + 4 ride-along audit findings (U-3 master)

GitHub #10 reopened: operator mikeakasully cloned v2.0.50 fresh and ran the
canonical quickstart (docker compose -f deploy/docker-compose.yml up -d --build);
postgres reported unhealthy indefinitely, dependent containers never started.

Root cause: deploy/docker-compose.yml mounted a hand-curated subset of
migrations/*.up.sql + seed.sql into postgres /docker-entrypoint-initdb.d/.
Postgres applied them at initdb time. Once seed.sql referenced columns added
by migrations *after* the mounted cutoff (e.g., policy_rules.severity from
migration 000013), initdb crashed mid-seed and the container loop wedged.
Two sources of truth (compose mount list vs in-tree migration ladder)
diverged the moment a seed-touching migration shipped, and the only thing
that fixed it was hand-editing the compose file every release.

Fix: remove the dual source. Postgres boots empty; the server applies
migrations + seed at startup via RunMigrations + RunSeed. Helm has used
this pattern since day one (postgres-init emptyDir); compose now matches.

Bundled with four ride-along audit findings whose fixes share the same
schema/db code surface, so operators take the schema-change pain only once:

  cat-u-seed_initdb_schema_drift           [P1, primary] — initdb-mount fix
  cat-o-retry_interval_unit_mismatch       [P1] — column rename minutes→seconds
  cat-o-notification_created_at_dead_field [P2] — add column + populate
  cat-o-health_check_column_orphans        [P1] — drop unwired columns
  cat-u-no_version_endpoint                [P2] — add /api/v1/version

Single migration (000017_db_coupling_cleanup) bundles the three schema
changes under a DO \$\$ guard so re-application is safe; reduces
operator-visible 'schema-change releases' from four to one.

Backend
- internal/repository/postgres/db.go: add RunSeed (baseline) + RunDemoSeed
  (gated by CERTCTL_DEMO_SEED). Both idempotent (ON CONFLICT DO NOTHING in
  every shipped INSERT) so repeated boots are safe; missing-file is no-op
  so custom packaging that strips seeds still boots cleanly.
- cmd/server/main.go: invoke RunSeed (always) + RunDemoSeed (when flag set)
  immediately after RunMigrations.
- internal/repository/postgres/notification.go: NotificationRepository.Create
  now sets created_at (with time.Now() fallback when caller leaves it zero);
  scanNotification reads it back; List + ListRetryEligible SELECT extended.
- internal/repository/postgres/renewal_policy.go: column references updated
  to retry_interval_seconds across SELECT/INSERT/UPDATE sites.
- internal/api/handler/version.go: new VersionHandler exposes
  {version, commit, modified, build_time, go_version} from
  runtime/debug.ReadBuildInfo() with ldflags-supplied Version override.
- internal/api/router/router.go: register GET /api/v1/version through the
  no-auth chain (CORS + ContentType) alongside /health, /ready,
  /api/v1/auth/info.
- cmd/server/main.go: add /api/v1/version to no-auth dispatch + audit
  ExcludePaths so rollout polling doesn't dominate the audit trail.
- internal/config/config.go: add DatabaseConfig.DemoSeed +
  CERTCTL_DEMO_SEED env var.

Migration
- migrations/000017_db_coupling_cleanup.up.sql + .down.sql:
    (1) renewal_policies.retry_interval_minutes → retry_interval_seconds
        (DO \$\$ guard, idempotent re-application)
    (2) notification_events ADD COLUMN created_at TIMESTAMPTZ
        NOT NULL DEFAULT NOW()
    (3) network_scan_targets DROP orphan health_check_enabled +
        health_check_interval_seconds
- migrations/seed.sql: column reference updated to retry_interval_seconds.
- migrations/seed_demo.sql: same column rename + applied at runtime now via
  RunDemoSeed (no longer initdb-mounted).

Compose
- deploy/docker-compose.yml: drop ALL initdb mounts (10 migration files +
  seed.sql); add start_period: 30s to postgres + certctl-server healthchecks
  to absorb the runtime migration + seed application window on first boot.
- deploy/docker-compose.test.yml: same drop (+ ghost seed_test.sql mount
  removed; that file never existed); same healthcheck start_period.
- deploy/docker-compose.demo.yml: replace seed_demo.sql initdb mount with
  CERTCTL_DEMO_SEED=true env var on certctl-server.

Tests
- internal/api/handler/version_handler_test.go: TestVersion_ReturnsBuildInfo,
  TestVersion_RejectsNonGet, TestVersion_LdflagsOverride.
- internal/repository/postgres/seed_test.go: TestRunSeed_AppliesIdempotently,
  TestRunSeed_MissingFileIsNoOp, TestRunDemoSeed_AppliesIdempotently,
  TestMigration000017_RetryIntervalRename,
  TestMigration000017_NotificationCreatedAt,
  TestMigration000017_HealthCheckOrphansDropped (testcontainers, -short skips).
- internal/repository/postgres/notification_test.go:
  TestNotificationRepository_CreatedAt_IsPersisted +
  TestNotificationRepository_CreatedAt_DefaultsToNow.

CI guardrail
- .github/workflows/ci.yml: new 'Forbidden migration mount in compose initdb
  (U-3)' step grep-fails the build if any migrations/*.sql or seed*.sql
  re-appears in /docker-entrypoint-initdb.d in any compose file. Catches
  future drift before a fresh-clone operator hits it.

Spec / Docs
- api/openapi.yaml: add /api/v1/version operation under Health tag.
- docs/architecture.md: replace the 'initdb may run the same SQL' paragraph
  with a post-U-3 single-source-of-truth explanation.
- CHANGELOG.md: full unreleased-section entry covering all 5 closures,
  breaking changes, and the new env var.

Audit doc
- coverage-gap-audit-2026-04-24-v5/unified-audit.md: add new P1 #14
  cat-u-seed_initdb_schema_drift; flip the 4 ride-along findings to
   RESOLVED with closure prose pointing at this commit.

Verification: build/vet/test -short -race all clean across all touched
packages locally; govulncheck reports 0 vulnerabilities affecting our
code; OpenAPI YAML parses; CI U-3 grep guardrail clears against the
post-fix tree.
This commit is contained in:
shankar0123
2026-04-25 13:29:23 +00:00
parent aa6fafdee9
commit a3d8b9c607
23 changed files with 1157 additions and 51 deletions
+108
View File
@@ -131,3 +131,111 @@ func RunMigrations(db *sql.DB, migrationsPath string) error {
return nil
}
// RunSeed reads and executes the baseline seed SQL file from the migrations
// directory. Designed to run AFTER RunMigrations so every column referenced by
// the seed is already in place.
//
// U-3 (P1, cat-u-seed_initdb_schema_drift): pre-U-3 the deploy compose stack
// mounted both a hand-curated subset of `migrations/*.up.sql` and `seed.sql`
// into postgres `/docker-entrypoint-initdb.d/`. Postgres applied them at
// initdb time. When `seed.sql` was updated to reference columns added by
// migrations *after* the mounted cutoff (e.g., `policy_rules.severity` from
// `000013_policy_rule_severity.up.sql`), initdb crashed during the seed step
// and the container was reported `unhealthy` indefinitely — bare
// `docker compose -f deploy/docker-compose.yml up -d --build` from a fresh
// clone of v2.0.50 hit this on the first try (GitHub #10 reopened by
// mikeakasully). Helm and the example compose files were already runtime-
// only (Path B) and worked through the same window.
//
// Post-U-3 the compose stack drops all initdb mounts; postgres comes up with
// an empty schema; the server applies all migrations via RunMigrations and
// then this function applies the seed. Single source of truth, removes the
// drift hazard architecturally.
//
// The seed file is expected at `<migrationsPath>/seed.sql`. Missing-file is
// treated as a no-op (returns nil) so deployments that explicitly remove the
// seed (custom packaging, cert-manager managed schemas) don't break.
//
// Idempotency: every INSERT in the shipped seed.sql uses
// `ON CONFLICT (id) DO NOTHING`, so re-running on a populated DB is safe.
// This function is invoked on every server start, so the contract MUST hold.
//
// Demo seed: `seed_demo.sql` is applied separately by RunDemoSeed below
// when CERTCTL_DEMO_SEED=true (see internal/config/config.go::DemoSeed).
// Splitting demo from baseline keeps a default deploy from accidentally
// landing 90-days-of-fake-history into a real customer database, while
// still giving the demo overlay a single source of truth (no more initdb
// mounts). The demo seed itself uses ON CONFLICT (id) DO NOTHING so it's
// idempotent; missing-file is also tolerated (custom packaging may strip
// seed_demo.sql to shrink the image).
func RunSeed(db *sql.DB, migrationsPath string) error {
if _, err := os.Stat(migrationsPath); os.IsNotExist(err) {
return fmt.Errorf("migrations directory not found: %s", migrationsPath)
}
seedPath := filepath.Join(migrationsPath, "seed.sql")
content, err := os.ReadFile(seedPath)
if err != nil {
if os.IsNotExist(err) {
// Missing seed.sql is acceptable — operators may have removed it
// for custom-packaging reasons. Return nil rather than fail-loud.
return nil
}
return fmt.Errorf("failed to read seed file %s: %w", seedPath, err)
}
if _, err := db.Exec(string(content)); err != nil {
return fmt.Errorf("failed to execute seed file %s: %w", seedPath, err)
}
return nil
}
// RunDemoSeed applies the demo overlay seed file
// (`<migrationsPath>/seed_demo.sql`) on top of the baseline seed.
//
// U-3 follow-on: pre-U-3 the demo overlay mounted `seed_demo.sql` into
// postgres `/docker-entrypoint-initdb.d/` and relied on initdb to apply it
// alongside the schema. Once U-3 dropped the initdb migration mounts, that
// path stopped working — postgres comes up empty, and the demo seed
// references tables (issuers, certificates, etc.) that wouldn't exist yet
// at initdb time. RunDemoSeed restores the demo capability through the
// same runtime path RunSeed uses, gated by CERTCTL_DEMO_SEED so production
// deploys never accidentally land the fake-history rows.
//
// Order contract: must run AFTER RunSeed so foreign-key references from
// demo rows to baseline rows (e.g., demo certificates referencing
// `rp-default` from baseline) resolve cleanly. The caller in
// cmd/server/main.go enforces this order.
//
// Missing-file is acceptable (returns nil) — operators packaging a
// production-only image often strip seed_demo.sql to shrink the artifact,
// and that should not break boot when CERTCTL_DEMO_SEED happens to be set.
//
// Idempotency: every INSERT in seed_demo.sql uses
// `ON CONFLICT (id) DO NOTHING`, so re-running on a populated DB is safe.
// Server restarts in demo mode therefore re-apply the file harmlessly.
func RunDemoSeed(db *sql.DB, migrationsPath string) error {
if _, err := os.Stat(migrationsPath); os.IsNotExist(err) {
return fmt.Errorf("migrations directory not found: %s", migrationsPath)
}
seedPath := filepath.Join(migrationsPath, "seed_demo.sql")
content, err := os.ReadFile(seedPath)
if err != nil {
if os.IsNotExist(err) {
// Custom production packaging frequently strips this file.
// Fail-soft to preserve the U-3 contract: a missing seed file
// must not gate server boot.
return nil
}
return fmt.Errorf("failed to read demo seed file %s: %w", seedPath, err)
}
if _, err := db.Exec(string(content)); err != nil {
return fmt.Errorf("failed to execute demo seed file %s: %w", seedPath, err)
}
return nil
}