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fix(deploy,db,handler): close fresh-clone postgres init failure + 4 ride-along audit findings (U-3 master)
GitHub #10 reopened: operator mikeakasully cloned v2.0.50 fresh and ran the canonical quickstart (docker compose -f deploy/docker-compose.yml up -d --build); postgres reported unhealthy indefinitely, dependent containers never started. Root cause: deploy/docker-compose.yml mounted a hand-curated subset of migrations/*.up.sql + seed.sql into postgres /docker-entrypoint-initdb.d/. Postgres applied them at initdb time. Once seed.sql referenced columns added by migrations *after* the mounted cutoff (e.g., policy_rules.severity from migration 000013), initdb crashed mid-seed and the container loop wedged. Two sources of truth (compose mount list vs in-tree migration ladder) diverged the moment a seed-touching migration shipped, and the only thing that fixed it was hand-editing the compose file every release. Fix: remove the dual source. Postgres boots empty; the server applies migrations + seed at startup via RunMigrations + RunSeed. Helm has used this pattern since day one (postgres-init emptyDir); compose now matches. Bundled with four ride-along audit findings whose fixes share the same schema/db code surface, so operators take the schema-change pain only once: cat-u-seed_initdb_schema_drift [P1, primary] — initdb-mount fix cat-o-retry_interval_unit_mismatch [P1] — column rename minutes→seconds cat-o-notification_created_at_dead_field [P2] — add column + populate cat-o-health_check_column_orphans [P1] — drop unwired columns cat-u-no_version_endpoint [P2] — add /api/v1/version Single migration (000017_db_coupling_cleanup) bundles the three schema changes under a DO \$\$ guard so re-application is safe; reduces operator-visible 'schema-change releases' from four to one. Backend - internal/repository/postgres/db.go: add RunSeed (baseline) + RunDemoSeed (gated by CERTCTL_DEMO_SEED). Both idempotent (ON CONFLICT DO NOTHING in every shipped INSERT) so repeated boots are safe; missing-file is no-op so custom packaging that strips seeds still boots cleanly. - cmd/server/main.go: invoke RunSeed (always) + RunDemoSeed (when flag set) immediately after RunMigrations. - internal/repository/postgres/notification.go: NotificationRepository.Create now sets created_at (with time.Now() fallback when caller leaves it zero); scanNotification reads it back; List + ListRetryEligible SELECT extended. - internal/repository/postgres/renewal_policy.go: column references updated to retry_interval_seconds across SELECT/INSERT/UPDATE sites. - internal/api/handler/version.go: new VersionHandler exposes {version, commit, modified, build_time, go_version} from runtime/debug.ReadBuildInfo() with ldflags-supplied Version override. - internal/api/router/router.go: register GET /api/v1/version through the no-auth chain (CORS + ContentType) alongside /health, /ready, /api/v1/auth/info. - cmd/server/main.go: add /api/v1/version to no-auth dispatch + audit ExcludePaths so rollout polling doesn't dominate the audit trail. - internal/config/config.go: add DatabaseConfig.DemoSeed + CERTCTL_DEMO_SEED env var. Migration - migrations/000017_db_coupling_cleanup.up.sql + .down.sql: (1) renewal_policies.retry_interval_minutes → retry_interval_seconds (DO \$\$ guard, idempotent re-application) (2) notification_events ADD COLUMN created_at TIMESTAMPTZ NOT NULL DEFAULT NOW() (3) network_scan_targets DROP orphan health_check_enabled + health_check_interval_seconds - migrations/seed.sql: column reference updated to retry_interval_seconds. - migrations/seed_demo.sql: same column rename + applied at runtime now via RunDemoSeed (no longer initdb-mounted). Compose - deploy/docker-compose.yml: drop ALL initdb mounts (10 migration files + seed.sql); add start_period: 30s to postgres + certctl-server healthchecks to absorb the runtime migration + seed application window on first boot. - deploy/docker-compose.test.yml: same drop (+ ghost seed_test.sql mount removed; that file never existed); same healthcheck start_period. - deploy/docker-compose.demo.yml: replace seed_demo.sql initdb mount with CERTCTL_DEMO_SEED=true env var on certctl-server. Tests - internal/api/handler/version_handler_test.go: TestVersion_ReturnsBuildInfo, TestVersion_RejectsNonGet, TestVersion_LdflagsOverride. - internal/repository/postgres/seed_test.go: TestRunSeed_AppliesIdempotently, TestRunSeed_MissingFileIsNoOp, TestRunDemoSeed_AppliesIdempotently, TestMigration000017_RetryIntervalRename, TestMigration000017_NotificationCreatedAt, TestMigration000017_HealthCheckOrphansDropped (testcontainers, -short skips). - internal/repository/postgres/notification_test.go: TestNotificationRepository_CreatedAt_IsPersisted + TestNotificationRepository_CreatedAt_DefaultsToNow. CI guardrail - .github/workflows/ci.yml: new 'Forbidden migration mount in compose initdb (U-3)' step grep-fails the build if any migrations/*.sql or seed*.sql re-appears in /docker-entrypoint-initdb.d in any compose file. Catches future drift before a fresh-clone operator hits it. Spec / Docs - api/openapi.yaml: add /api/v1/version operation under Health tag. - docs/architecture.md: replace the 'initdb may run the same SQL' paragraph with a post-U-3 single-source-of-truth explanation. - CHANGELOG.md: full unreleased-section entry covering all 5 closures, breaking changes, and the new env var. Audit doc - coverage-gap-audit-2026-04-24-v5/unified-audit.md: add new P1 #14 cat-u-seed_initdb_schema_drift; flip the 4 ride-along findings to ✅ RESOLVED with closure prose pointing at this commit. Verification: build/vet/test -short -race all clean across all touched packages locally; govulncheck reports 0 vulnerabilities affecting our code; OpenAPI YAML parses; CI U-3 grep guardrail clears against the post-fix tree.
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@@ -353,7 +353,7 @@ The ER diagram above documents **database shape**, not REST-API wire shape. Seve
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- `agents.api_key_hash` — SHA-256 of the agent's plaintext API key, populated by `service.RegisterAgent` (`hashAPIKey(apiKey)` at `internal/service/agent.go`) and consumed by `repository.AgentRepository::GetByAPIKey` for the auth-lookup. **Not** exposed via the REST API, **not** echoed via CLI / MCP / agent registration response, **never** logged. Enforced by `internal/domain/connector.go::Agent.MarshalJSON` (G-2 audit closure, `cat-s5-apikey_leak`); the OpenAPI Agent schema explicitly excludes the field, the frontend `Agent` interface omits it, and a CI grep guardrail at `.github/workflows/ci.yml` blocks reintroduction.
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- `issuers.config` / `deployment_targets.config` — plaintext jsonb shadow of the AES-GCM-encrypted on-disk blob; the encrypted form lives on `EncryptedConfig []byte` (Go-only field tagged `json:"-"`).
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Migrations are idempotent (`IF NOT EXISTS` on all CREATE statements, `ON CONFLICT (id) DO NOTHING` on all seed data) so they're safe to run multiple times — important for Docker Compose where both initdb and the server may run the same SQL.
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Migrations are idempotent (`IF NOT EXISTS` on all CREATE statements, `ON CONFLICT (id) DO NOTHING` on all seed data) so they're safe to run multiple times. Pre-U-3 (`cat-u-seed_initdb_schema_drift`, GitHub #10) the deploy compose stack mounted both a hand-curated subset of `migrations/*.up.sql` and `seed.sql` into postgres `/docker-entrypoint-initdb.d/` so initdb applied them on first boot, *and* the server re-applied the same files via `RunMigrations` on every start. The dual source of truth was the bug: every time a migration shipped that the seed depended on (e.g., 000013 added `policy_rules.severity`), the mount list had to be updated by hand, and missing the update crashed initdb on first boot. Post-U-3 the server is the single source of truth: postgres comes up with an empty schema, `RunMigrations` applies the entire ladder, then `RunSeed` lands the baseline seed (and `RunDemoSeed` lands the demo overlay when `CERTCTL_DEMO_SEED=true`). Helm has used this pattern since day one (postgres-init `emptyDir`); the docker-compose deploy now matches.
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## Data Flow: Certificate Lifecycle
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